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    Nucleoporin autopeptidase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837579, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Nucleoporin autopeptidase
    Primary source
    TAIR:AT1G10390
    Locus tag
    AT1G10390
    See related
    Araport:AT1G10390
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14N23.29; F14N23_29
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    14
    Sequence:
    Chromosome: 1; NC_003070.9 (3406956..3412874, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Vps51/Vps67 family (components of vesicular transport) protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene CW14 protein (DUF1336) Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. DRACULA2 is a dynamic nucleoporin with a role in regulating the shade avoidance syndrome in Arabidopsis. Gallemí M, et al. Development, 2016 May 1. PMID 26989173
    2. Nucleoporin Nup98 participates in flowering regulation in a CONSTANS-independent mode. Jiang S, et al. Plant Cell Rep, 2019 Oct. PMID 31236659
    3. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001035941.2
    NM_001331900.1
    NM_100914.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables structural constituent of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA export from nucleus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within photoperiodism, flowering IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of shade avoidance IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nuclear envelope IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nuclear membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Nucleoporin autopeptidase
    NP_001031018.1
    • Nucleoporin autopeptidase; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, nuclear pore; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S59, nucleoporin (InterPro:IPR007230); BEST Arabidopsis thaliana protein match is: Nucleoporin autopeptidase (TAIR:AT1G59660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_172510.2
    • Nucleoporin autopeptidase; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, nuclear pore; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S59, nucleoporin (InterPro:IPR007230); BEST Arabidopsis thaliana protein match is: Nucleoporin autopeptidase (TAIR:AT1G59660.1); Has 77624 Blast hits to 32376 proteins in 1819 species: Archae - 124; Bacteria - 21147; Metazoa - 21029; Fungi - 13994; Plants - 4522; Viruses - 746; Other Eukaryotes - 16062 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3406956..3412874 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001035941.2 → NP_001031018.1  Nucleoporin autopeptidase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031018.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RY25, Q9SY83
      UniProtKB/TrEMBL
      A0A178W081, A0A178W2Q0, A0A5S9TNA7
      Conserved Domains (4) summary
      PHA03307
      Location:145 → 540
      PHA03307; transcriptional regulator ICP4; Provisional
      PTZ00473
      Location:236 → 340
      PTZ00473; Plasmodium Vir superfamily; Provisional
      pfam04096
      Location:886 → 1027
      Nucleoporin2; Nucleoporin autopeptidase
      NF033849
      Location:84 → 338
      ser_rich_anae_1; serine-rich protein

    2. NM_100914.4 → NP_172510.2  Nucleoporin autopeptidase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172510.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RY25, Q9SY83
      UniProtKB/TrEMBL
      A0A178W081, A0A178W2Q0, A0A5S9TNA7
      Conserved Domains (4) summary
      PHA03307
      Location:145 → 540
      PHA03307; transcriptional regulator ICP4; Provisional
      PTZ00473
      Location:236 → 340
      PTZ00473; Plasmodium Vir superfamily; Provisional
      pfam04096
      Location:886 → 1027
      Nucleoporin2; Nucleoporin autopeptidase
      NF033849
      Location:84 → 338
      ser_rich_anae_1; serine-rich protein

    3. NM_001331900.1 → NP_001320682.1  Nucleoporin autopeptidase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RY25, Q9SY83
      UniProtKB/TrEMBL
      A0A178W081, A0A178W2Q0, A0A5S9TNA7
      Conserved Domains (4) summary
      PHA03307
      Location:145 → 540
      PHA03307; transcriptional regulator ICP4; Provisional
      PTZ00473
      Location:236 → 340
      PTZ00473; Plasmodium Vir superfamily; Provisional
      pfam04096
      Location:886 → 1027
      Nucleoporin2; Nucleoporin autopeptidase
      NF033849
      Location:84 → 338
      ser_rich_anae_1; serine-rich protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RY25.1

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