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    FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818872, updated on 18-Sep-2024

    Summary

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    Official Full Name
    FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein
    Primary source
    TAIR:AT2G42720
    Locus tag
    AT2G42720
    See related
    Araport:AT2G42720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7D19.28; F7D19_28
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (17785354..17787421)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene vesicle docking protein Neighboring gene Ribosomal protein L1p/L10e family Neighboring gene transcription factor Neighboring gene F-box/FBD/LRR protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_129833.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein
    NP_181800.2
    • FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G42730.2); Has 1980 Blast hits to 1943 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1978; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      17785354..17787421
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129833.4 → NP_181800.2  FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181800.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6DR13, Q8H1M3, Q9SJI4
      UniProtKB/TrEMBL
      A0A178VV59, A0A5S9X6I7
      Conserved Domains (4) summary
      smart00579
      Location:379 → 442
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:137 → 159
      LRR_2; leucine-rich repeat [structural motif]
      pfam07723
      Location:159 → 185
      LRR_2; Leucine Rich Repeat
      pfam00646
      Location:2 → 38
      F-box; F-box domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6DR13.1

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