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    CHR5 chromatin remodeling 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 815823, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CHR5
    Official Full Name
    chromatin remodeling 5
    Primary source
    TAIR:AT2G13370
    Locus tag
    AT2G13370
    See related
    Araport:AT2G13370
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    chromatin remodeling 5; F14O4.6; F14O4_6
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    Genomic context

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    See CHR5 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    31
    Sequence:
    Chromosome: 2; NC_003071.7 (5544054..5556560, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein Neighboring gene alanine:glyoxylate aminotransferase Neighboring gene ncRNA Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis Chromatin-Remodeling Factor CHR5 Regulates Plant Immune Responses and Nucleosome Occupancy. Zou B, et al. Plant Cell Physiol, 2017 Dec 1. PMID 29048607
    2. Characterization of a phosphatase 2C protein as an interacting partner of the histone acetyltransferase GCN5 in Arabidopsis. Servet C, et al. Biochim Biophys Acta, 2008 Jun-Jul. PMID 18498779
    3. Identification and dynamics of Arabidopsis adaptor protein-2 complex and its involvement in floral organ development. Yamaoka S, et al. Plant Cell, 2013 Aug. PMID 23975897, Free PMC Article
    4. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    5. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. CHR5 is a positive regulator of plant immune responses including the expression of SNC1 and reveals a role for CHR5 in nucleosome occupancy.
      Title: The Arabidopsis Chromatin-Remodeling Factor CHR5 Regulates Plant Immune Responses and Nucleosome Occupancy.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001335389.1
    NM_001335390.1
    NM_126926.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    chromatin remodeling 5
    NP_178970.3
    • chromatin remodeling 5 (CHR5); FUNCTIONS IN: chromatin binding, helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 38529 Blast hits to 28045 proteins in 2467 species: Archae - 189; Bacteria - 9973; Metazoa - 8887; Fungi - 6205; Plants - 2508; Viruses - 447; Other Eukaryotes - 10320 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      5544054..5556560 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126926.5 → NP_178970.3  chromatin remodeling 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178970.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IV99, Q9SI41
      UniProtKB/TrEMBL
      A0A654ESL3
      Conserved Domains (6) summary
      smart00298
      Location:460 → 499
      CHROMO; Chromatin organization modifier domain
      cd00046
      Location:645 → 791
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:628 → 914
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:938 → 1053
      Helicase_C; Helicase conserved C-terminal domain
      pfam00385
      Location:534 → 588
      Chromo; Chromo (CHRromatin Organization MOdifier) domain
      pfam13907
      Location:1530 → 1626
      DUF4208; Domain of unknown function (DUF4208)

    2. NM_001335389.1 → NP_001325087.1  chromatin remodeling 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IV99, Q9SI41
      UniProtKB/TrEMBL
      A0A654ESL3
      Conserved Domains (6) summary
      smart00298
      Location:460 → 499
      CHROMO; Chromatin organization modifier domain
      cd00046
      Location:645 → 791
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:628 → 914
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:938 → 1053
      Helicase_C; Helicase conserved C-terminal domain
      pfam00385
      Location:534 → 588
      Chromo; Chromo (CHRromatin Organization MOdifier) domain
      pfam13907
      Location:1530 → 1626
      DUF4208; Domain of unknown function (DUF4208)

    3. NM_001335390.1 → NP_001325086.1  chromatin remodeling 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IV99, Q9SI41
      UniProtKB/TrEMBL
      A0A654ESL3
      Conserved Domains (6) summary
      smart00298
      Location:460 → 499
      CHROMO; Chromatin organization modifier domain
      cd00046
      Location:645 → 791
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:628 → 914
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:938 → 1053
      Helicase_C; Helicase conserved C-terminal domain
      pfam00385
      Location:534 → 588
      Chromo; Chromo (CHRromatin Organization MOdifier) domain
      pfam13907
      Location:1530 → 1626
      DUF4208; Domain of unknown function (DUF4208)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4IV99.1

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