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    hydroxyproline-rich glycoprotein family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838036, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hydroxyproline-rich glycoprotein family protein
    Primary source
    TAIR:AT1G14710
    Locus tag
    AT1G14710
    See related
    Araport:AT1G14710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10B6.11; F10B6_11
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (5061694..5065303, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene microtubule-associated protein 65-7 Neighboring gene purple acid phosphatase 3 Neighboring gene xyloglucan endotransglucosylase/hydrolase 28 Neighboring gene Cytochrome b561/ferric reductase transmembrane protein family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    2. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_101340.4
    NM_179332.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hydroxyproline-rich glycoprotein family protein
    NP_563957.1
    • hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G02940.1); Has 6006 Blast hits to 3456 proteins in 374 species: Archae - 2; Bacteria - 410; Metazoa - 1957; Fungi - 511; Plants - 1958; Viruses - 385; Other Eukaryotes - 783 (source: NCBI BLink).
    NP_849663.1
    • hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G02940.1); Has 6006 Blast hits to 3456 proteins in 374 species: Archae - 2; Bacteria - 410; Metazoa - 1957; Fungi - 511; Plants - 1958; Viruses - 385; Other Eukaryotes - 783 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5061694..5065303 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101340.4 → NP_563957.1  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563957.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WI74, B9DGU1, F4HWB0
      Conserved Domains (2) summary
      PHA03247
      Location:453 → 558
      PHA03247; large tegument protein UL36; Provisional
      cl21496
      Location:326 → 428
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

    2. NM_179332.3 → NP_849663.1  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849663.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WI74, B9DGU1, F4HWB0
      Conserved Domains (2) summary
      PHA03247
      Location:453 → 558
      PHA03247; large tegument protein UL36; Provisional
      cl21496
      Location:326 → 428
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
    Nucleotide Protein
    Heading Accession and Version

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