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    IDH-IV isocitrate dehydrogenase IV [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840142, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IDH-IV
    Official Full Name
    isocitrate dehydrogenase IV
    Primary source
    TAIR:AT1G32480
    Locus tag
    AT1G32480
    See related
    Araport:AT1G32480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5D14.26; F5D14_26; isocitrate dehydrogenase IV
    Summary
    Predicted to encode a protein related isocitrate dehydrogenases, but it appears to be missing the sequences encoding the N-terminal portion of the protein.
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    Genomic context

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    See IDH-IV in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (11741083..11741990)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene plastidial pyruvate kinase 3 Neighboring gene nitrate transporter 1.5 Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Single hybrid motif superfamily protein Neighboring gene RNA helicase family protein Neighboring gene non-intrinsic ABC protein 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    isocitrate dehydrogenase IV
    NP_174526.2
    • isocitrate dehydrogenase IV (IDH-IV); FUNCTIONS IN: oxidoreductase activity, NAD or NADH binding, magnesium ion binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; INVOLVED IN: oxidation reduction, metabolic process; CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804); BEST Arabidopsis thaliana protein match is: isocitrate dehydrogenase 1 (TAIR:AT4G35260.1); Has 12323 Blast hits to 12322 proteins in 2503 species: Archae - 387; Bacteria - 7994; Metazoa - 590; Fungi - 529; Plants - 231; Viruses - 0; Other Eukaryotes - 2592 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      11741083..11741990
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102983.2 → NP_174526.2  isocitrate dehydrogenase IV [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174526.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WJM7
      Conserved Domains (1) summary
      cl00445
      Location:2 → 213
      Iso_dh; Isocitrate/isopropylmalate dehydrogenase
    Nucleotide Protein
    Heading Accession and Version

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