rom1b retinal outer segment membrane protein 1b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rom1bprovided by ZNC
Official Full Name: retinal outer segment membrane protein 1bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1073
See related: Ensembl:ENSDARG00000026926 AllianceGenome:ZFIN:ZDB-GENE-040426-1073
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: Rds; zgc:56548
Summary: Predicted to be involved in protein localization to plasma membrane and protein maturation. Predicted to act upstream of or within visual perception. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in eye; retina; and retinal photoreceptor layer. Human ortholog(s) of this gene implicated in retinitis pigmentosa 7. Orthologous to human ROM1 (retinal outer segment membrane protein 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 14

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	14	NC_007125.7 (45675306..45699755)
105	previous assembly	GRCz10 (GCF_000002035.5)	14	NC_007125.6 (46688018..46712463)

Chromosome 14 - NC_007125.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in protein localization to plasma membrane	IBA Inferred from Biological aspect of Ancestor more info
involved_in protein maturation	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within visual perception	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: rod outer segment membrane protein 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_201014.2 → NP_957308.2 rod outer segment membrane protein 1b

Status: VALIDATED

Source sequence(s)

CR383676, CU856338

UniProtKB/TrEMBL

Q7ZWC5

Related

ENSDARP00000096234.2, ENSDART00000105461.4

Conserved Domains (1) summary

cd03162
Location:120 → 262

peripherin_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...