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    dhx29 DEAH (Asp-Glu-Ala-His) box polypeptide 29 [ Danio rerio (zebrafish) ]

    Gene ID: 553505, updated on 9-Dec-2024

    Summary

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    Official Symbol
    dhx29provided by ZNC
    Official Full Name
    DEAH (Asp-Glu-Ala-His) box polypeptide 29provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-130530-606
    See related
    Ensembl:ENSDARG00000040326 AllianceGenome:ZFIN:ZDB-GENE-130530-606
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and translation initiation factor activity. Predicted to be involved in positive regulation of translational initiation. Predicted to act upstream of or within translational initiation. Predicted to be located in cytoplasm. Orthologous to human DHX29 (DExH-box helicase 29). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See dhx29 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (8154667..8197192, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (8196068..8238505, complement)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene proline-serine-threonine phosphatase interacting protein 2 Neighboring gene NADH:ubiquinone oxidoreductase subunit A9b Neighboring gene multiciliate differentiation and DNA synthesis associated cell cycle protein Neighboring gene Mtr4 exosome RNA helicase Neighboring gene phospholipid phosphatase 1a Neighboring gene chondroitin sulfate N-acetylgalactosaminyltransferase 1a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Mutations in gfpt1 and skiv2l2 cause distinct stage-specific defects in larval melanocyte regeneration in zebrafish. Yang CT, et al. PLoS Genet, 2007 Jun. PMID 17542649, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables translation initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in positive regulation of translational initiation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within translational initiation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ATP-dependent RNA helicase DHX29
    Names
    zmp:0000000603

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      8154667..8197192 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_692841.10 → XP_697933.6  ATP-dependent RNA helicase DHX29

      UniProtKB/TrEMBL
      A0A8N7T8I5
      Related
      ENSDARP00000107280.3, ENSDART00000129467.4
      Conserved Domains (5) summary
      smart00487
      Location:568 → 766
      DEXDc; DEAD-like helicases superfamily
      smart00847
      Location:1065 → 1140
      HA2; Helicase associated domain (HA2) Add an annotation
      cd00046
      Location:591 → 738
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      cd00079
      Location:841 → 996
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      pfam07717
      Location:1181 → 1309
      OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
    Nucleotide Protein Strain
    Heading Accession and Version

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