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    c2cd3 C2 domain containing 3 centriole elongation regulator [ Danio rerio (zebrafish) ]

    Gene ID: 797081, updated on 9-Dec-2024

    Summary

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    Official Symbol
    c2cd3provided by ZNC
    Official Full Name
    C2 domain containing 3 centriole elongation regulatorprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060503-104
    See related
    Ensembl:ENSDARG00000074137 AllianceGenome:ZFIN:ZDB-GENE-060503-104
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fc56e12; si:ch211-149e23.1; si:ch211-152b13.3; si:ch211-152b13.4
    Summary
    Predicted to be involved in centriole elongation; cilium assembly; and protein localization to centrosome. Predicted to be active in centriolar satellite and centriole. Human ortholog(s) of this gene implicated in orofaciodigital syndrome XIV. Orthologous to human C2CD3 (C2 domain containing 3 centriole elongation regulator). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See c2cd3 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (15258756..15301431)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (15322736..15365409)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene si:ch211-149e23.4 Neighboring gene ribosomal RNA processing 8 Neighboring gene mediator complex subunit 29 Neighboring gene calcium/calmodulin-dependent protein kinase kinase 1, alpha b Neighboring gene 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Differential recruitment of co-regulatory proteins to the human estrogen receptor 1 in response to xenoestrogens. Smith LC, et al. Comp Biochem Physiol Part D Genomics Proteomics, 2016 Sep. PMID 27156127, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    C2 domain-containing protein 3
    Names
    C2 calcium-dependent domain containing 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      15258756..15301431
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001337498.7 → XP_001337534.5  C2 domain-containing protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A8M1Q789, A0A8M9PBZ2
      Related
      ENSDARP00000128677.1, ENSDART00000155719.3
      Conserved Domains (2) summary
      cd08683
      Location:1091 → 1229
      C2_C2cd3; C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins
      pfam00168
      Location:1521 → 1629
      C2; C2 domain

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394939.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      106201..147993
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068218786.1 → XP_068074887.1  C2 domain-containing protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A8M9PBZ2
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials