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    transmembrane protein (DUF962) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820062, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein (DUF962)
    Primary source
    TAIR:AT3G09085
    Locus tag
    AT3G09085
    See related
    Araport:AT3G09085
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (2782133..2782740)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene LOW protein: UPF0503-like protein, putative (DUF740) Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene ncRNA Neighboring gene defective in exine formation protein (DEX1) Neighboring gene ncRNA Neighboring gene mRNA capping enzyme family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_111743.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein (DUF962)
    NP_566342.1
    • Protein of unknown function (DUF962); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF962 (InterPro:IPR009305); Has 704 Blast hits to 704 proteins in 265 species: Archae - 0; Bacteria - 429; Metazoa - 0; Fungi - 2; Plants - 37; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2782133..2782740
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111743.3 → NP_566342.1  transmembrane protein (DUF962) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566342.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VPW7, A0A384LFD6, Q8LDK7
      Conserved Domains (1) summary
      pfam06127
      Location:3 → 96
      DUF962; Protein of unknown function (DUF962)
    Nucleotide Protein
    Heading Accession and Version

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