zswim5 zinc finger, SWIM-type containing 5 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zswim5provided by ZNC
Official Full Name: zinc finger, SWIM-type containing 5provided by ZNC
Primary source: ZFIN:ZDB-GENE-030925-30
See related: Ensembl:ENSDARG00000055900 AllianceGenome:ZFIN:ZDB-GENE-030925-30
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fc05d01; sb:cb802; wu:fc05d01; si:ch73-38p6.1
Summary: Predicted to be part of Cul2-RING ubiquitin ligase complex. Is expressed in several structures, including axis; margin; mesoderm; nervous system; and tail bud. Orthologous to human ZSWIM5 (zinc finger SWIM-type containing 5). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 2

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	2	NC_007113.7 (27491101..27541205)
105	previous assembly	GRCz10 (GCF_000002035.5)	2	NC_007113.6 (27835467..27885571)

Chromosome 2 - NC_007113.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Markers

G40027 (e-PCR)
- UniSTS:37658

fc05d01.x1 (e-PCR)
- UniSTS:203704

fi69b07.y1 (e-PCR)
- UniSTS:197865

G46447 (e-PCR)
- UniSTS:107249

Gene Ontology Provided by ZFIN

Component	Evidence Code	Pubs
part_of Cul2-RING ubiquitin ligase complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: zinc finger SWIM domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.