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    cercam cerebral endothelial cell adhesion molecule [ Danio rerio (zebrafish) ]

    Gene ID: 558337, updated on 9-Dec-2024

    Summary

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    Official Symbol
    cercamprovided by ZNC
    Official Full Name
    cerebral endothelial cell adhesion moleculeprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-9787
    See related
    Ensembl:ENSDARG00000079049 AllianceGenome:ZFIN:ZDB-GENE-030131-9787
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    cb346; sb:cb346; im:7161577; wu:fc03d08; si:dkeyp-68f6.1
    Summary
    Is expressed in several structures, including central nervous system; neural tube; notochord; otic vesicle; and pectoral fin musculature. Orthologous to human CERCAM (cerebral endothelial cell adhesion molecule). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See cercam in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (10351700..10381165)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (10393402..10422927)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene ubiquitin related modifier 1 Neighboring gene microRNA 219-1 Neighboring gene sarcosine dehydrogenase Neighboring gene dopamine beta-hydroxylase (dopamine beta-monooxygenase)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    NOT enables procollagen galactosyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    glycosyltransferase 25 family member 3; inactive glycosyltransferase 25 family member 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      10351700..10381165
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021479272.2 → XP_021334947.1  inactive glycosyltransferase 25 family member 3

      UniProtKB/TrEMBL
      A0A8M9PTV2, E7F0F2
      Related
      ENSDARP00000102910.3, ENSDART00000109432.4
      Conserved Domains (2) summary
      cl01298
      Location:321 → 505
      Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...
      cl11394
      Location:35 → 164
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394772.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      80030..109495
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009305170.4 → XP_009303445.1  inactive glycosyltransferase 25 family member 3

      UniProtKB/TrEMBL
      A0A8M9PTV2, E7F0F2
      Conserved Domains (2) summary
      cl01298
      Location:321 → 505
      Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...
      cl11394
      Location:35 → 164
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    Nucleotide Protein Strain
    Heading Accession and Version

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