U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    si:dkey-238c7.16 si:dkey-238c7.16 [ Danio rerio (zebrafish) ]

    Gene ID: 559078, updated on 12-Sep-2024

    Summary

    Official Symbol
    si:dkey-238c7.16provided by ZNC
    Official Full Name
    si:dkey-238c7.16provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-4169
    See related
    Ensembl:ENSDARG00000069537 AllianceGenome:ZFIN:ZDB-GENE-030131-4169
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc76h06; wu:fc76h06
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See si:dkey-238c7.16 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (7478684..7481042, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (7519749..7522107, complement)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene anillin, actin binding protein 2 Neighboring gene putative pyruvate dehydrogenase phosphatase isoenzyme 2 Neighboring gene telomere repeat binding bouquet formation protein 1 Neighboring gene neuropilin (NRP) and tolloid (TLL)-like 2b Neighboring gene si:dkey-30c15.2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    uncharacterized protein LOC559078

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044882.2NP_001038347.2  uncharacterized protein LOC559078

      See identical proteins and their annotated locations for NP_001038347.2

      Status: PREDICTED

      Source sequence(s)
      BC133966
      UniProtKB/TrEMBL
      A3KNR2, A3KQ99
      Related
      ENSDARP00000092066.3, ENSDART00000101292.4

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      7478684..7481042 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395003.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      122710..125069 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)