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    tes testis derived transcript (3 LIM domains) [ Danio rerio (zebrafish) ]

    Gene ID: 403032, updated on 9-Dec-2024

    Summary

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    Official Symbol
    tesprovided by ZNC
    Official Full Name
    testis derived transcript (3 LIM domains)provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040718-59
    See related
    Ensembl:ENSDARG00000051857 AllianceGenome:ZFIN:ZDB-GENE-040718-59
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:92091
    Summary
    Predicted to enable zinc ion binding activity. Predicted to be located in focal adhesion. Orthologous to human TES (testin LIM domain protein). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See tes in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (18475029..18496410)
    105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (18378629..18400010)

    Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene carboxypeptidase A1 (pancreatic) Neighboring gene carboxypeptidase A5 Neighboring gene caveolin 2 Neighboring gene caveolin 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Tes regulates neural crest migration and axial elongation in Xenopus. Dingwell KS, et al. Dev Biol, 2006 May 1. PMID 16554046
    2. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in anchoring junction IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in focal adhesion IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    testin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_205720.2 → NP_991283.2  testin

      Status: VALIDATED

      Source sequence(s)
      CT573397
      UniProtKB/TrEMBL
      A0A8M1PGR8, F1QNJ3
      Related
      ENSDARP00000068054.4, ENSDART00000073564.5
      Conserved Domains (5) summary
      cd09413
      Location:354 → 411
      LIM1_Testin; The first LIM domain of Testin
      cd09416
      Location:417 → 472
      LIM2_Testin; The second LIM domain of Testin
      cd09419
      Location:479 → 537
      LIM3_Testin; The third LIM domain of Testin
      pfam01391
      Location:295 → 350
      Collagen; Collagen triple helix repeat (20 copies)
      cd09829
      Location:205 → 291
      PET_testin; The PET domain of Testin

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007136.7 Reference GRCz11 Primary Assembly

      Range
      18475029..18496410
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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