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    pold3 polymerase (DNA-directed), delta 3, accessory subunit [ Danio rerio (zebrafish) ]

    Gene ID: 692256, updated on 27-Dec-2024

    Summary

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    Official Symbol
    pold3provided by ZNC
    Official Full Name
    polymerase (DNA-directed), delta 3, accessory subunitprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060512-59
    See related
    Ensembl:ENSDARG00000076169 AllianceGenome:ZFIN:ZDB-GENE-060512-59
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:136471
    Summary
    Predicted to act upstream of or within DNA replication. Predicted to be located in nucleus. Predicted to be part of delta DNA polymerase complex. Orthologous to human POLD3 (DNA polymerase delta 3, accessory subunit). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See pold3 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (21743680..21754630)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (21707044..21717994)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene odorant receptor, family 61, subfamily C, member 3 Neighboring gene defensin, beta-like 1 Neighboring gene chordin-like 2 Neighboring gene X-ray radiation resistance associated 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Ovarian transcriptomic signatures of zebrafish females resistant to different environmental perturbations. Valdivieso A, et al. J Exp Zool B Mol Dev Evol, 2019 May. PMID 30945804
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of delta DNA polymerase complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DNA polymerase delta subunit 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001042769.2 → NP_001036234.1  DNA polymerase delta subunit 3

      Status: PROVISIONAL

      Source sequence(s)
      BC107842, CK706761
      UniProtKB/TrEMBL
      A0A8M1N920, Q3B731
      Related
      ENSDARP00000092475.4, ENSDART00000101700.5
      Conserved Domains (1) summary
      pfam09507
      Location:18 → 457
      CDC27; DNA polymerase subunit Cdc27

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      21743680..21754630
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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