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    rbbp8l retinoblastoma binding protein 8-like [ Danio rerio (zebrafish) ]

    Gene ID: 324358, updated on 9-Dec-2024

    Summary

    Official Symbol
    rbbp8lprovided by ZNC
    Official Full Name
    retinoblastoma binding protein 8-likeprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-3078
    See related
    Ensembl:ENSDARG00000087032 AllianceGenome:ZFIN:ZDB-GENE-030131-3078
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc26f04; wu:fc26f04; si:ch211-200e2.1
    Summary
    Predicted to enable damaged DNA binding activity. Predicted to be involved in DNA double-strand break processing involved in repair via single-strand annealing. Orthologous to human RBBP8NL (RBBP8 N-terminal like). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See rbbp8l in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (7471068..7504033)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (7536613..7567987)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137489175 Neighboring gene uncharacterized LOC137489176 Neighboring gene HCK proto-oncogene, Src family tyrosine kinase Neighboring gene transmembrane 9 superfamily protein member 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables damaged DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in DNA double-strand break processing involved in repair via single-strand annealing IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    RBBP8 N-terminal-like protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      7471068..7504033
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005174119.5XP_005174176.1  RBBP8 N-terminal-like protein

      See identical proteins and their annotated locations for XP_005174176.1

      UniProtKB/TrEMBL
      A0A8M2BLD6, E7F5C4, F1QUK9
      Related
      ENSDARP00000122644.2, ENSDART00000135551.4
      Conserved Domains (1) summary
      pfam10482
      Location:6124
      CtIP_N; Tumour-suppressor protein CtIP N-terminal domain