nitr1c novel immune-type receptor 1c [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: nitr1cprovided by ZNC
Official Full Name: novel immune-type receptor 1cprovided by ZNC
Primary source: ZFIN:ZDB-GENE-001106-4
See related: AllianceGenome:ZFIN:ZDB-GENE-001106-4
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: nitr1; nitr1.2; nitr1.16; nitr1.21; nitr1.59; nitr1.63; SI:dZ169I8.5
Summary: Predicted to be located in plasma membrane. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 7

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	7	NC_007118.7 (17472211..17474070)
105	previous assembly	GRCz10 (GCF_000002035.5)	7	NC_007118.6 (17220202..17222097)

Chromosome 7 - NC_007118.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in response to bacterium	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in plasma membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: novel immune-type receptor 1c

Names: immune-type receptor; novel immune-type receptor 1; novel immune-type receptor 1.16; novel immune-type receptor 1.2; novel immune-type receptor 1.21

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_198350.2 → NP_938164.2 novel immune-type receptor 1c precursor

Status: VALIDATED

Source sequence(s)

CU179759

UniProtKB/TrEMBL

F1QT68, Q8UV99

Conserved Domains (1) summary

pfam07686
Location:147 → 244

V-set; Immunoglobulin V-set domain