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    TRM6 serine-rich adhesin for platelets-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819744, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TRM6
    Official Full Name
    serine-rich adhesin for platelets-like protein
    Primary source
    TAIR:AT3G05750
    Locus tag
    AT3G05750
    See related
    Araport:AT3G05750
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10A16.3; F10A16_3; TON1 Recruiting Motif 6
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    Genomic context

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    See TRM6 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (1703850..1707730)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RECQ helicase l1 Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein Neighboring gene uncharacterized protein Neighboring gene tRNA-Pro Neighboring gene C2H2 and C2HC zinc fingers superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The preprophase band of microtubules controls the robustness of division orientation in plants. Schaefer E, et al. Science, 2017 Apr 14. PMID 28408602
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001035570.1
    NM_001337606.1
    NM_001337607.1
    NM_111449.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within establishment of mitotic spindle orientation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within preprophase band assembly IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in preprophase band IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine-rich adhesin for platelets-like protein
    NP_001030647.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26910.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_187226.2
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26910.1); Has 2317 Blast hits to 1467 proteins in 247 species: Archae - 4; Bacteria - 750; Metazoa - 557; Fungi - 182; Plants - 180; Viruses - 0; Other Eukaryotes - 644 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1703850..1707730
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111449.4 → NP_187226.2  serine-rich adhesin for platelets-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187226.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EIP8, F4J8I0, Q9M9M1
      Conserved Domains (2) summary
      pfam14309
      Location:646 → 792
      DUF4378; Domain of unknown function (DUF4378)
      pfam14383
      Location:90 → 110
      VARLMGL; DUF761-associated sequence motif

    2. NM_001337606.1 → NP_001325711.1  serine-rich adhesin for platelets-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J8I1, Q9M9M1

    3. NM_001337607.1 → NP_001325712.1  serine-rich adhesin for platelets-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LM29, Q9M9M1

    4. NM_001035570.1 → NP_001030647.1  serine-rich adhesin for platelets-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030647.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J8I1, Q9M9M1
      Conserved Domains (1) summary
      pfam14309
      Location:544 → 689
      DUF4378; Domain of unknown function (DUF4378)
    Nucleotide Protein
    Heading Accession and Version

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