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    irgq1 immunity-related GTPase family, q1 [ Danio rerio (zebrafish) ]

    Gene ID: 565312, updated on 9-Dec-2024

    Summary

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    Official Symbol
    irgq1provided by ZNC
    Official Full Name
    immunity-related GTPase family, q1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-051212-3
    See related
    Ensembl:ENSDARG00000086847 AllianceGenome:ZFIN:ZDB-GENE-051212-3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable GTP binding activity. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See irgq1 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (25806408..25812946)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (25891373..25897015)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene BCL3 transcription coactivator Neighboring gene uncharacterized LOC137487904 Neighboring gene Cbl proto-oncogene C, E3 ubiquitin protein ligase Neighboring gene uncharacterized LOC103908931 Neighboring gene interferon-inducible GTPase 5-like Neighboring gene immunity-related GTPase family, e4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. The interferon-inducible p47 (IRG) GTPases in vertebrates: loss of the cell autonomous resistance mechanism in the human lineage. Bekpen C, et al. Genome Biol, 2005. PMID 16277747, Free PMC Article
    2. The role of gamma interferon in innate immunity in the zebrafish embryo. Sieger D, et al. Dis Model Mech, 2009 Nov-Dec. PMID 19779068
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    interferon gamma induced GTPase; uncharacterized protein irgq1
    Names
    immunity-related GTPase family, cinema 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      25806408..25812946
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_688591.9 → XP_693683.6  uncharacterized protein irgq1

      UniProtKB/TrEMBL
      A0A8N7UR59, X1WE34
      Related
      ENSDARP00000128485.1, ENSDART00000154652.2
    Nucleotide Protein
    Heading Accession and Version

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