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    slc38a8b solute carrier family 38 member 8b [ Danio rerio (zebrafish) ]

    Gene ID: 795255, updated on 9-Dec-2024

    Summary

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    Official Symbol
    slc38a8bprovided by ZNC
    Official Full Name
    solute carrier family 38 member 8bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-121005-6
    See related
    Ensembl:ENSDARG00000054196 AllianceGenome:ZFIN:ZDB-GENE-121005-6
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be located in membrane. Human ortholog(s) of this gene implicated in foveal hypoplasia 2. Orthologous to human SLC38A8 (solute carrier family 38 member 8). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See slc38a8b in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (29163165..29175996)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (28895767..28904847)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene metallothionein-B-like Neighboring gene transmembrane protein with metallophosphoesterase domain Neighboring gene exosome component 6 Neighboring gene APH1B gamma secretase subunit Neighboring gene HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 Neighboring gene death-associated protein kinase 2a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Distribution of transcripts of the GFOD gene family members gfod1 and gfod2 in the zebrafish central nervous system. Lechermeier CG, et al. Gene Expr Patterns, 2020 Jun. PMID 32197942
    2. Spatiotemporal resolution of the Ntla transcriptome in axial mesoderm development. Shestopalov IA, et al. Nat Chem Biol, 2012 Jan 29. PMID 22286130, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative sodium-coupled neutral amino acid transporter 8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      29163165..29175996
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068222626.1 → XP_068078727.1  putative sodium-coupled neutral amino acid transporter 8 isoform X2

      UniProtKB/TrEMBL
      A0A8M9PPQ5

    2. XM_068222624.1 → XP_068078725.1  putative sodium-coupled neutral amino acid transporter 8 isoform X1

      Related
      ENSDARP00000142782.1, ENSDART00000173762.2

    3. XM_068222625.1 → XP_068078726.1  putative sodium-coupled neutral amino acid transporter 8 isoform X2

      UniProtKB/TrEMBL
      A0A8M9PPQ5
      Related
      ENSDARP00000070819.5, ENSDART00000076345.6

    4. XM_021477832.2 → XP_021333507.1  putative sodium-coupled neutral amino acid transporter 8 isoform X2

      UniProtKB/TrEMBL
      A0A8M9PPQ5
      Conserved Domains (1) summary
      cl00456
      Location:32 → 438
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394694.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      47742..60573
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068218406.1 → XP_068074507.1  putative sodium-coupled neutral amino acid transporter 8 isoform X2

      UniProtKB/TrEMBL
      A0A8M9PPQ5

    2. XM_068218403.1 → XP_068074504.1  putative sodium-coupled neutral amino acid transporter 8 isoform X1

    3. XM_068218405.1 → XP_068074506.1  putative sodium-coupled neutral amino acid transporter 8 isoform X2

      UniProtKB/TrEMBL
      A0A8M9PPQ5

    4. XM_021471921.2 → XP_021327596.1  putative sodium-coupled neutral amino acid transporter 8 isoform X2

      UniProtKB/TrEMBL
      A0A8M9PPQ5
      Conserved Domains (1) summary
      cl00456
      Location:32 → 438
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    Nucleotide Protein
    Heading Accession and Version

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