si:dkey-66i24.8 si:dkey-66i24.8 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:dkey-66i24.8provided by ZNC
Official Full Name: si:dkey-66i24.8provided by ZNC
Primary source: ZFIN:ZDB-GENE-130531-72
See related: Ensembl:ENSDARG00000088084 AllianceGenome:ZFIN:ZDB-GENE-130531-72
Gene type: protein coding
RefSeq status: MODEL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs: all
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Genomic context

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Location:: chromosome: 3

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	3	NC_007114.7 (31087495..31091843)
105	previous assembly	GRCz10 (GCF_000002035.5)	3	NC_007114.6 (30956594..30959784)

Chromosome 3 - NC_007114.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IBA Inferred from Biological aspect of Ancestor more info
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: zinc finger protein 84

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007114.7 Reference GRCz11 Primary Assembly

Range

31087495..31091843

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_017354779.3 → XP_017210268.1 zinc finger protein 84

UniProtKB/TrEMBL

A0A8M6YZ84, F1QUM9

Related

ENSDARP00000108335.2, ENSDART00000129564.3

Reference GRCz11 ALT_DRER_TU_1

Genomic

NW_018394534.1 Reference GRCz11 ALT_DRER_TU_1

Range

160904..164620

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021471443.2 → XP_021327118.1 zinc finger protein 84

UniProtKB/TrEMBL

A0A8M9PJG5

Conserved Domains (2) summary

COG5048
Location:57 → 392

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:167 → 187

ZF_C2H2; C2H2 Zn finger [structural motif]