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    si:ch211-195b11.3 si:ch211-195b11.3 [ Danio rerio (zebrafish) ]

    Gene ID: 100334344, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:ch211-195b11.3provided by ZNC
    Official Full Name
    si:ch211-195b11.3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-141222-6
    See related
    Ensembl:ENSDARG00000100582 AllianceGenome:ZFIN:ZDB-GENE-141222-6
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to act upstream of or within negative regulation of peptidase activity. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch211-195b11.3 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (38786287..38791884)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (38445973..38451570)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137487609 Neighboring gene microRNA 145 Neighboring gene casein kinase 1, alpha 1 Neighboring gene SIL1 nucleotide exchange factor Neighboring gene spindle apparatus coiled-coil protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Spatiotemporal Characterization of Anterior Segment Mesenchyme Heterogeneity During Zebrafish Ocular Anterior Segment Development. Van Der Meulen KL, et al. Front Cell Dev Biol, 2020. PMID 32528955, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables peptidase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables serine-type endopeptidase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC100334344
    Names
    pancreatic secretory trypsin inhibitor-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001291900.1 → NP_001278829.1  uncharacterized protein LOC100334344 precursor

      Status: VALIDATED

      Source sequence(s)
      EB766055, EB769236, EB842398, EH441449
      UniProtKB/TrEMBL
      A0A0R4IDC4, A0A8M1P0S0
      Related
      ENSDARP00000131020.1, ENSDART00000164440.2
      Conserved Domains (1) summary
      smart00280
      Location:27 → 70
      KAZAL; Kazal type serine protease inhibitors

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      38786287..38791884
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394925.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      61681..67278
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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