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    raly RALY heterogeneous nuclear ribonucleoprotein [ Danio rerio (zebrafish) ]

    Gene ID: 402903, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ralyprovided by ZNC
    Official Full Name
    RALY heterogeneous nuclear ribonucleoproteinprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041010-127
    See related
    Ensembl:ENSDARG00000059972 AllianceGenome:ZFIN:ZDB-GENE-041010-127
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:103445
    Summary
    Predicted to enable RNA binding activity. Predicted to be active in nucleus. Is expressed in central nervous system; heart rudiment; and neurons. Orthologous to human RALY (RALY heterogeneous nuclear ribonucleoprotein). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See raly in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (50022150..50203682, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (50023494..50205046, complement)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137496021 Neighboring gene eukaryotic translation initiation factor 2, subunit 2 beta Neighboring gene uncharacterized LOC101886784 Neighboring gene uncharacterized LOC137496022

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. BAC Recombineering of the Agouti Loci from Spotted Gar and Zebrafish Reveals the Evolutionary Ancestry of Dorsal-Ventral Pigment Asymmetry in Fish. Cal L, et al. J Exp Zool B Mol Dev Evol, 2017 Nov. PMID 28544213, Free PMC Article
    2. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC103445

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    RNA-binding protein Raly
    Names
    RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog)
    hnRNP-associated with lethal yellow

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_205610.1 → NP_991173.1  RNA-binding protein Raly

      See identical proteins and their annotated locations for NP_991173.1

      Status: PROVISIONAL

      Source sequence(s)
      AY398405
      UniProtKB/TrEMBL
      Q6TGV1
      Related
      ENSDARP00000078434.5, ENSDART00000083999.7
      Conserved Domains (1) summary
      cd12604
      Location:20 → 95
      RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      50022150..50203682 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068221689.1 → XP_068077790.1  RNA-binding protein Raly isoform X1

      UniProtKB/TrEMBL
      A0A8M2BJH7, F1QAY0

    2. XM_068221690.1 → XP_068077791.1  RNA-binding protein Raly isoform X2

      UniProtKB/TrEMBL
      A0A8M2BJG2, F1QKR6

    3. XM_005172104.5 → XP_005172161.1  RNA-binding protein Raly isoform X2

      UniProtKB/TrEMBL
      A0A8M2BJG2, F1QKR6
      Related
      ENSDARP00000118719.2, ENSDART00000143050.3
      Conserved Domains (1) summary
      cd12604
      Location:20 → 95
      RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly

    4. XM_005172103.5 → XP_005172160.1  RNA-binding protein Raly isoform X1

      UniProtKB/TrEMBL
      A0A8M2BJH7, F1QAY0
      Related
      ENSDARP00000139787.1, ENSDART00000163648.3
      Conserved Domains (1) summary
      cd12604
      Location:20 → 95
      RRM_RALY; RNA recognition motif in vertebrate RNA-binding protein Raly
    Nucleotide Protein Strain
    Heading Accession and Version

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