marchf4b membrane associated ring-CH-type finger 4b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: marchf4bprovided by ZNC
Official Full Name: membrane associated ring-CH-type finger 4bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-041210-304
See related: Ensembl:ENSDARG00000056439 AllianceGenome:ZFIN:ZDB-GENE-041210-304
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: march4; marchf4; si:ch211-239d11.2
Summary: Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in membrane. Is expressed in ovarian follicle stage I and ovarian follicle stage II. Orthologous to human MARCHF4 (membrane associated ring-CH-type finger 4). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 9

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	9	NC_007120.7 (52492639..52539704)
105	previous assembly	GRCz10 (GCF_000002035.5)	9	NC_007120.6 (52953132..53000197)

Chromosome 9 - NC_007120.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables ubiquitin-protein transferase activity	IBA Inferred from Biological aspect of Ancestor more info
enables ubiquitin-protein transferase activity	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within protein ubiquitination	IEA Inferred from Electronic Annotation more info
involved_in protein ubiquitination	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: membrane associated ring-CH-type finger 4b

Names: membrane associated ring-CH-type finger 4; membrane-associated ring finger (C3HC4) 4

NP_001025336.1

EC 2.3.2.27

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001030165.1 → NP_001025336.1 membrane associated ring-CH-type finger 4b

Status: PROVISIONAL

Source sequence(s)

CR392344

UniProtKB/TrEMBL

A0A8M1N7A9, Q5RFW5

Related

ENSDARP00000073397.4, ENSDART00000078939.7

Conserved Domains (1) summary

smart00744
Location:107 → 153

RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins