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    zgc:113030 zgc:113030 [ Danio rerio (zebrafish) ]

    Gene ID: 553738, updated on 9-Dec-2024

    Summary

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    Official Symbol
    zgc:113030provided by ZNC
    Official Full Name
    zgc:113030provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050522-528
    See related
    Ensembl:ENSDARG00000069869 AllianceGenome:ZFIN:ZDB-GENE-050522-528
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in heart. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See zgc:113030 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (60070009..60074792)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (59778383..59783693)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene zgc:113265 Neighboring gene zinc finger protein 420-like Neighboring gene uncharacterized LOC101882598 Neighboring gene gastrula zinc finger protein XlCGF49.1-like Neighboring gene zinc finger protein 665 Neighboring gene zgc:174268 Neighboring gene zinc finger protein 502-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Trapping cardiac recessive mutants via expression-based insertional mutagenesis screening. Ding Y, et al. Circ Res, 2013 Feb 15. PMID 23283723, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC113030

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC553738

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001020709.1 → NP_001018545.1  uncharacterized protein LOC553738

      See identical proteins and their annotated locations for NP_001018545.1

      Status: PREDICTED

      Source sequence(s)
      BC095859
      UniProtKB/TrEMBL
      Q501V1
      Conserved Domains (3) summary
      COG5048
      Location:25 → 204
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:20 → 40
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:200 → 225
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      60070009..60074792
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005164277.4 → XP_005164334.1  uncharacterized protein LOC553738

      UniProtKB/TrEMBL
      A0A8M9QAM1, F1QBY4
      Related
      ENSDARP00000074886.3, ENSDART00000080437.5
      Conserved Domains (3) summary
      COG5048
      Location:25 → 204
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:20 → 40
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:200 → 225
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein Strain
    Heading Accession and Version

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