arl2bp ADP-ribosylation factor-like 2 binding protein [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: arl2bpprovided by ZNC
Official Full Name: ADP-ribosylation factor-like 2 binding proteinprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1604
See related: Ensembl:ENSDARG00000025383 AllianceGenome:ZFIN:ZDB-GENE-040426-1604
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: BART1; zgc:66308; zgc:77496
Summary: Predicted to be located in several cellular components, including cilium; microtubule cytoskeleton; and mitochondrion. Predicted to be active in mitochondrial intermembrane space. Human ortholog(s) of this gene implicated in retinitis pigmentosa with or without situs inversus. Orthologous to human ARL2BP (ADP ribosylation factor like GTPase 2 binding protein). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 18

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	18	NC_007129.7 (18871061..18875295, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	18	NC_007129.6 (18881556..18890713, complement)

Chromosome 18 - NC_007129.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Component	Evidence Code	Pubs
located_in cell projection	IEA Inferred from Electronic Annotation more info
located_in centrosome	IEA Inferred from Electronic Annotation more info
located_in cilium	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoskeleton	IEA Inferred from Electronic Annotation more info
is_active_in mitochondrial intermembrane space	IBA Inferred from Biological aspect of Ancestor more info
located_in mitochondrial intermembrane space	IEA Inferred from Electronic Annotation more info
located_in mitochondrion	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
located_in spindle	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: ADP-ribosylation factor-like protein 2-binding protein

Names: ARF-like 2-binding protein; binder of Arl Two

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_201001.2 → NP_957295.2 ADP-ribosylation factor-like protein 2-binding protein

Status: VALIDATED

Source sequence(s)

EH541682

UniProtKB/Swiss-Prot

Q6NYS0, Q7SYL1

UniProtKB/TrEMBL

A0A8M1PDV8

Related

ENSDARP00000110496.2, ENSDART00000127182.3

Conserved Domains (1) summary

pfam11527
Location:43 → 150

ARL2_Bind_BART; The ARF-like 2 binding protein BART