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    rlf RLF zinc finger [ Danio rerio (zebrafish) ]

    Gene ID: 562452, updated on 27-Dec-2024

    Summary

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    Official Symbol
    rlfprovided by ZNC
    Official Full Name
    RLF zinc fingerprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050208-257
    See related
    Ensembl:ENSDARG00000063553 AllianceGenome:ZFIN:ZDB-GENE-050208-257
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    im:7146976; si:ch211-154e15.8
    Summary
    Predicted to enable metal ion binding activity. Orthologous to human RLF (RLF zinc finger). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See rlf in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (24590174..24602500)
    105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (24571759..24584099)

    Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette, sub-family H, member 1 Neighboring gene aftiphilin b Neighboring gene dynein light chain Tctex-type 1a Neighboring gene zinc metallopeptidase, STE24 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein Rlf
    Names
    rearranged L-myc fusion

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007128.7 Reference GRCz11 Primary Assembly

      Range
      24590174..24602500
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021467415.2 → XP_021323090.2  zinc finger protein Rlf

      UniProtKB/TrEMBL
      A0A8M9PPH3
      Related
      ENSDARP00000087373.3, ENSDART00000092941.5

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394990.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      150901..164292
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_685832.10 → XP_690924.8  zinc finger protein Rlf

      UniProtKB/TrEMBL
      A0A8N7UUY2
    Nucleotide Protein Strain
    Heading Accession and Version

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