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    lrrc51 leucine rich repeat containing 51 [ Danio rerio (zebrafish) ]

    Gene ID: 767801, updated on 9-Dec-2024

    Summary

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    Official Symbol
    lrrc51provided by ZNC
    Official Full Name
    leucine rich repeat containing 51provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060929-962
    See related
    Ensembl:ENSDARG00000040668 AllianceGenome:ZFIN:ZDB-GENE-060929-962
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    lrrp51; lrtomt; zgc:153736
    Summary
    Located in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See lrrc51 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (44053244..44062826)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (44029801..44049290)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene nuclear mitotic apparatus protein 1-like Neighboring gene small Cajal body-specific RNA 14 Neighboring gene nuclear mitotic apparatus protein 1 Neighboring gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 Neighboring gene paraneoplastic antigen Ma2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Integration of Tmc1/2 into the mechanotransduction complex in zebrafish hair cells is regulated by Transmembrane O-methyltransferase (Tomt). Erickson T, et al. Elife, 2017 May 23. PMID 28534737, Free PMC Article
    2. Discovery and characterization of novel vascular and hematopoietic genes downstream of etsrp in zebrafish. Gomez GA, et al. PLoS One, 2009. PMID 19308258, Free PMC Article
    3. Systematic discovery of novel ciliary genes through functional genomics in the zebrafish. Choksi SP, et al. Development, 2014 Sep. PMID 25139857, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC153736

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-rich repeat-containing protein 51
    Names
    leucine rich transmembrane and 0-methyltransferase domain containing
    leucine rich transmembrane and O-methyltransferase domain containing
    NP_001070236.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076768.1 → NP_001070236.1  leucine-rich repeat-containing protein 51

      See identical proteins and their annotated locations for NP_001070236.1

      Status: PROVISIONAL

      Source sequence(s)
      BC124442
      UniProtKB/TrEMBL
      A0A8M3AIT5, Q08C25
      Related
      ENSDARP00000059549.3, ENSDART00000059550.5
      Conserved Domains (3) summary
      sd00031
      Location:71 → 93
      LRR_1; leucine-rich repeat [structural motif]
      pfam12799
      Location:69 → 112
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:69 → 129
      LRR_8; Leucine rich repeat

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      44053244..44062826
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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