U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    psme3ip1 proteasome activator subunit 3 interacting protein 1 [ Danio rerio (zebrafish) ]

    Gene ID: 334752, updated on 9-Dec-2024

    Summary

    Official Symbol
    psme3ip1provided by ZNC
    Official Full Name
    proteasome activator subunit 3 interacting protein 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-6692
    See related
    Ensembl:ENSDARG00000041631 AllianceGenome:ZFIN:ZDB-GENE-030131-6692
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fa02g12; fam192a; zgc:65774; wu:fa02g12
    Summary
    Predicted to be active in nucleus. Orthologous to human PSME3IP1 (proteasome activator subunit 3 interacting protein 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See psme3ip1 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (17707688..17724316, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (17718622..17735299, complement)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene NLR family, CARD domain containing 5 Neighboring gene copine II Neighboring gene ring finger and SPRY domain containing 1 Neighboring gene si:ch211-216l23.2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    PSME3-interacting protein
    Names
    NEFA-interacting nuclear protein NIP30
    family with sequence similarity 192 member A

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199924.1NP_956218.1  PSME3-interacting protein

      See identical proteins and their annotated locations for NP_956218.1

      Status: PROVISIONAL

      Source sequence(s)
      BC056511
      UniProtKB/TrEMBL
      Q6PHL2
      Related
      ENSDARP00000061015.5, ENSDART00000061016.7
      Conserved Domains (1) summary
      pfam10187
      Location:8108
      Nefa_Nip30_N; N-terminal domain of NEFA-interacting nuclear protein NIP30

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      17707688..17724316 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068214730.1XP_068070831.1  PSME3-interacting protein isoform X2

      UniProtKB/TrEMBL
      A0A8M2B5J4, E9QGB8, Q1LX81
    2. XM_068214729.1XP_068070830.1  PSME3-interacting protein isoform X1

      UniProtKB/TrEMBL
      A0A8M2B5M8