sec23ip SEC23 interacting protein [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: sec23ipprovided by ZNC
Official Full Name: SEC23 interacting proteinprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-5259
See related: Ensembl:ENSDARG00000061413 AllianceGenome:ZFIN:ZDB-GENE-030131-5259
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fa20e07; wu:fa20e07; zgc:152883; si:dkey-192p21.3
Summary: Predicted to enable metal ion binding activity. Predicted to be active in COPII-coated ER to Golgi transport vesicle. Orthologous to human SEC23IP (SEC23 interacting protein). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 13

Exon count:: 18

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	13	NC_007124.7 (25549424..25566308)
105	previous assembly	GRCz10 (GCF_000002035.5)	13	NC_007124.6 (25418974..25435858)

Chromosome 13 - NC_007124.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

G39444 (e-PCR)
- UniSTS:47777

fa20e07.s1 (e-PCR)
- UniSTS:202466

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables phospholipase activity	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in COPII-coated ER to Golgi transport vesicle	IBA Inferred from Biological aspect of Ancestor more info
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: SEC23-interacting protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001077379.1 → NP_001070847.1 SEC23-interacting protein

See identical proteins and their annotated locations for NP_001070847.1

Status: PROVISIONAL

Source sequence(s)

BC124597

UniProtKB/TrEMBL

Q08BR7

Related

ENSDARP00000081987.4, ENSDART00000087553.5

Conserved Domains (4) summary

smart00454
Location:630 → 683

SAM; Sterile alpha motif

pfam02862
Location:758 → 965

DDHD; DDHD domain

cl02729
Location:251 → 323

WWE; WWE domain

cl15755
Location:628 → 688

SAM_superfamily; SAM (Sterile alpha motif )