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    nudt22 nudix (nucleoside diphosphate linked moiety X)-type motif 22 [ Danio rerio (zebrafish) ]

    Gene ID: 450049, updated on 9-Dec-2024

    Summary

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    Official Symbol
    nudt22provided by ZNC
    Official Full Name
    nudix (nucleoside diphosphate linked moiety X)-type motif 22provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041010-171
    See related
    Ensembl:ENSDARG00000071671 AllianceGenome:ZFIN:ZDB-GENE-041010-171
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:101709
    Summary
    Predicted to enable GDP-mannose hydrolase activity. Orthologous to human NUDT22 (nudix hydrolase 22). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See nudt22 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (22467672..22478719)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (22170427..22181903)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene sosondowah ankyrin repeat domain family member Ab Neighboring gene growth differentiation factor 9 Neighboring gene si:ch211-107m4.1 Neighboring gene SMYD family member 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables GDP-mannose hydrolase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uridine diphosphate glucose pyrophosphatase NUDT22
    NP_001006069.1
    XP_005173175.1
    XP_021336681.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006069.1 → NP_001006069.1  uridine diphosphate glucose pyrophosphatase NUDT22

      See identical proteins and their annotated locations for NP_001006069.1

      Status: PROVISIONAL

      Source sequence(s)
      BC083253
      UniProtKB/TrEMBL
      Q5XJP5
      Related
      ENSDARP00000073865.3, ENSDART00000079409.5
      Conserved Domains (1) summary
      cd02883
      Location:158 → 311
      Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      22467672..22478719
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021481006.2 → XP_021336681.1  uridine diphosphate glucose pyrophosphatase NUDT22 isoform X1

      UniProtKB/TrEMBL
      A0A8M9QKJ9, F1QQK5
      Related
      ENSDARP00000121110.1, ENSDART00000136597.3
      Conserved Domains (1) summary
      cd02883
      Location:158 → 311
      Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...

    2. XM_005173118.5 → XP_005173175.1  uridine diphosphate glucose pyrophosphatase NUDT22 isoform X1

      See identical proteins and their annotated locations for XP_005173175.1

      UniProtKB/TrEMBL
      A0A8M9QKJ9, F1QQK5
      Conserved Domains (1) summary
      cd02883
      Location:158 → 311
      Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...
    Nucleotide Protein Strain
    Heading Accession and Version

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