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    TPS-CIN terpene synthase-like sequence-1,8-cineole [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822177, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TPS-CIN
    Official Full Name
    terpene synthase-like sequence-1,8-cineole
    Primary source
    TAIR:AT3G25830
    Locus tag
    AT3G25830
    See related
    Araport:AT3G25830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ''terpene synthase-like sequence-1; 8-cineole; 8-cineole''; ATTPS-CIN; terpene synthase-like sequence-1
    Summary
    Encodes the monoterpene 1,8-cineole synthase, atTPS-Cin. This polypeptide was also shown to synthesize other monoterpenes albeit in minor quantities. The same polypeptide is encoded at two different loci, the result of gene duplication: at3g25820 and at3g25830.
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    Genomic context

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    See TPS-CIN in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (9447409..9451037)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene terpene synthase-like sequence-1,8-cineole Neighboring gene pseudo Neighboring gene Protein kinase superfamily protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Susceptibility to Verticillium longisporum is linked to monoterpene production by TPS23/27 in Arabidopsis. Roos J, et al. Plant J, 2015 Feb. PMID 25640950
    2. Characterization of a root-specific Arabidopsis terpene synthase responsible for the formation of the volatile monoterpene 1,8-cineole. Chen F, et al. Plant Physiol, 2004 Aug. PMID 15299125, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. TPS23/27-produced monoterpenes stimulate germination and subsequent invasion of Verticillium longisporum in Arabidopsis roots.
      Title: Susceptibility to Verticillium longisporum is linked to monoterpene production by TPS23/27 in Arabidopsis.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    NM_113485.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables (E)-beta-ocimene synthase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables 1,8-cineole synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables myrcene synthase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables terpene synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to fungus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in diterpenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within monoterpenoid biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    terpene synthase-like sequence-1,8-cineole
    NP_189212.1
    • ''terpene synthase-like sequence-1,8-cineole'' (TPS-CIN); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase-like sequence-1,8-cineole (TAIR:AT3G25820.1); Has 1733 Blast hits to 1705 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1729; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9447409..9451037
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113485.5 → NP_189212.1  terpene synthase-like sequence-1,8-cineole [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189212.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LQI2, C0Z3K7, P0DI76, P0DI77, Q0WMV0, Q9LDF1
      UniProtKB/TrEMBL
      A0A654FBZ7
      Conserved Domains (1) summary
      cd00684
      Location:47 → 591
      Terpene_cyclase_plant_C1; Plant Terpene Cyclases, Class 1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0DI76.1
    P0DI77.1

    Gene LinkOut

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