U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PGL1 6-phosphogluconolactonase 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837931, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    PGL1
    Official Full Name
    6-phosphogluconolactonase 1
    Primary source
    TAIR:AT1G13700
    Locus tag
    AT1G13700
    See related
    Araport:AT1G13700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    6-phosphogluconolactonase 1; F21F23.14; F21F23_14
    Summary
    Encodes a cytosolic 6-phosphogluconolactonase (PGL) thought to be involved in the oxidative pentose-phosphate pathway (OPPP).
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PGL1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (4694372..4696023, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene PLC-like phosphodiesterases superfamily protein Neighboring gene ncRNA Neighboring gene ATPase E1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene cytochrome P450, family 78, subfamily A, polypeptide 5

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Dual-targeting of Arabidopsis 6-phosphogluconolactonase 3 (PGL3) to chloroplasts and peroxisomes involves interaction with Trx m2 in the cytosol. Hölscher C, et al. Mol Plant, 2014 Jan. PMID 24008768
    2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    General gene information

    Go to the top of the page Help
    NM_001332082.1
    NM_001332083.1
    NM_101239.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 6-phosphogluconolactonase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in pentose-phosphate shunt IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    6-phosphogluconolactonase 1
    NP_001318995.1
    • 6-phosphogluconolactonase 1 (PGL1); FUNCTIONS IN: 6-phosphogluconolactonase activity, catalytic activity; INVOLVED IN: pentose-phosphate shunt, carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 6-phosphogluconolactonase, DevB-type (InterPro:IPR005900); BEST Arabidopsis thaliana protein match is: NagB/RpiA/CoA transferase-like superfamily protein (TAIR:AT5G24400.1); Has 3744 Blast hits to 3744 proteins in 1410 species: Archae - 0; Bacteria - 2521; Metazoa - 189; Fungi - 243; Plants - 155; Viruses - 0; Other Eukaryotes - 636 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4694372..4696023 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332082.1 → NP_001318995.1  6-phosphogluconolactonase 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LMX8
      UniProtKB/TrEMBL
      A0A178WNF3, A0A5S9UAD7, A0A654EAD0
      Conserved Domains (1) summary
      PLN02360
      Location:1 → 268
      PLN02360; probable 6-phosphogluconolactonase

    2. NM_101239.4 → NP_172826.1  6-phosphogluconolactonase 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172826.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LMX8
      UniProtKB/TrEMBL
      A0A178WNF3, A0A5S9UAD7, A0A654EAD0
      Conserved Domains (1) summary
      PLN02360
      Location:1 → 268
      PLN02360; probable 6-phosphogluconolactonase

    3. NM_001332083.1 → NP_001321621.1  6-phosphogluconolactonase 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LMX8
      UniProtKB/TrEMBL
      A0A178WNF3, A0A5S9UAD7, A0A654EAD0
      Conserved Domains (1) summary
      PLN02360
      Location:1 → 268
      PLN02360; probable 6-phosphogluconolactonase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LMX8.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools