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    HTA4 histone H2A 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826990, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HTA4
    Official Full Name
    histone H2A 4
    Primary source
    TAIR:AT4G13570
    Locus tag
    AT4G13570
    See related
    Araport:AT4G13570
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    histone H2A 4; T6G15.120; T6G15_120
    Summary
    Encodes HTA4, a histone H2A protein.
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    Genomic context

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    See HTA4 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (7884516..7885982)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Late embryogenesis abundant protein (LEA) family protein Neighboring gene ncRNA Neighboring gene microRNA ath-MIR5996 precursor Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    histone H2A 4
    NP_001190717.1
    • histone H2A 4 (HTA4); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: stem, embryo, sepal, seed; EXPRESSED DURING: 4 anthesis, F mature embryo stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2A 11 (TAIR:AT3G54560.1).
    NP_193093.1
    • histone H2A 4 (HTA4); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: stem, embryo, sepal, seed; EXPRESSED DURING: 4 anthesis, F mature embryo stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2A 11 (TAIR:AT3G54560.1); Has 3680 Blast hits to 3676 proteins in 321 species: Archae - 0; Bacteria - 0; Metazoa - 2383; Fungi - 290; Plants - 597; Viruses - 2; Other Eukaryotes - 408 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      7884516..7885982
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203788.1 → NP_001190717.1  histone H2A 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190717.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JT33
      Conserved Domains (1) summary
      PLN00154
      Location:35 → 124
      PLN00154; histone H2A; Provisional

    2. NM_117431.1 → NP_193093.1  histone H2A 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193093.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9T0H7
      UniProtKB/TrEMBL
      A0A654FNW6
      Conserved Domains (1) summary
      cl23907
      Location:28 → 118
      H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9T0H7.1

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