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    CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828427, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CRK20
    Official Full Name
    cysteine-rich RLK (RECEPTOR-like protein kinase) 20
    Primary source
    TAIR:AT4G23280
    Locus tag
    AT4G23280
    See related
    Araport:AT4G23280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    cysteine-rich RLK (RECEPTOR-like protein kinase) 20; F21P8.170; F21P8_170
    Summary
    Encodes a cysteine-rich receptor-like protein kinase.
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    Genomic context

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    See CRK20 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (12174733..12177576)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene cysteine-rich RLK (RECEPTOR-like protein kinase) 18 Neighboring gene cysteine-rich RLK (RECEPTOR-like protein kinase) 19 Neighboring gene uncharacterized protein Neighboring gene cysteine-rich RLK (RECEPTOR-like protein kinase) 21 Neighboring gene cysteine-rich RLK (RECEPTOR-like protein kinase) 22

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis thaliana cysteine-rich receptor-like kinase CRK20 modulates host responses to Pseudomonas syringae pv. tomato DC3000 infection. Ederli L, et al. J Plant Physiol, 2011 Oct 15. PMID 21742407
    2. Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis. Du L, et al. Plant J, 2000 Dec. PMID 11135117
    3. Activation of hypersensitive cell death by pathogen-induced receptor-like protein kinases from Arabidopsis. Chen K, et al. Plant Mol Biol, 2004 Sep. PMID 15604743
    4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The CRK20 gene is induced rapidly in response to both O(3) and Pseudomonas syringae, and that CRK20 disruption causes a restriction in the bacterial growth.
      Title: The Arabidopsis thaliana cysteine-rich receptor-like kinase CRK20 modulates host responses to Pseudomonas syringae pv. tomato DC3000 infection.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001341595.1
    NM_001341597.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within defense response to bacterium IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within programmed cell death IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to salicylic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    cysteine-rich RLK (RECEPTOR-like protein kinase) 20
    NP_001320044.1
    • cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (CRK20); FUNCTIONS IN: kinase activity; INVOLVED IN: defense response to bacterium, defense response, programmed cell death, response to salicylic acid stimulus; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (TAIR:AT4G23270.1); Has 119459 Blast hits to 118018 proteins in 4463 species: Archae - 96; Bacteria - 13614; Metazoa - 44023; Fungi - 10123; Plants - 33901; Viruses - 397; Other Eukaryotes - 17305 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12174733..12177576
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341596.1 → NP_001328177.1  cysteine-rich RLK (RECEPTOR-like protein kinase) 20 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V3B6, A0A1P8B3T4

    2. NM_001341595.1 → NP_001320044.1  cysteine-rich RLK (RECEPTOR-like protein kinase) 20 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JNH5, O65479
      UniProtKB/TrEMBL
      A0A178V3B6
      Conserved Domains (3) summary
      smart00219
      Location:347 → 616
      TyrKc; Tyrosine kinase, catalytic domain
      cd14066
      Location:350 → 617
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      pfam01657
      Location:32 → 127
      Stress-antifung; Salt stress response/antifungal

    3. NM_001341597.1 → NP_001328178.1  cysteine-rich RLK (RECEPTOR-like protein kinase) 20 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V3B6, A0A1P8B3T1, A0A5S9XVX9
      Conserved Domains (2) summary
      pfam01657
      Location:32 → 127
      Stress-antifung; Salt stress response/antifungal
      cl21453
      Location:350 → 567
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O65479.2

    Gene LinkOut

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