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    TIP41-like family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829577, updated on 18-Sep-2024

    Summary

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    Official Full Name
    TIP41-like family protein
    Primary source
    TAIR:AT4G34270
    Locus tag
    AT4G34270
    See related
    Araport:AT4G34270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10M10.40; F10M10_40
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (16403844..16406303, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene 1,2-alpha-L-fucosidase Neighboring gene uncharacterized protein Neighboring gene transducin family protein / WD-40 repeat family protein Neighboring gene SWIB/MDM2 domain superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evaluation of reference genes for RT-qPCR gene expression analysis in Arabidopsis thaliana exposed to elevated temperatures. Škiljaica A, et al. Plant Biol (Stuttg), 2022 Mar. PMID 34990067
    2. The PP2A-interactor TIP41 modulates ABA responses in Arabidopsis thaliana. Punzo P, et al. Plant J, 2018 Jun. PMID 29602224
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. modulates abscisic acid responses
      Title: The PP2A-interactor TIP41 modulates ABA responses in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

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    NM_119592.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within TOR signaling IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to temperature stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TIP41-like family protein
    NP_195153.2
    • TIP41-like family protein; CONTAINS InterPro DOMAIN/s: TIP41-like protein (InterPro:IPR007303); Has 348 Blast hits to 346 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 127; Plants - 55; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16403844..16406303 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119592.5 → NP_195153.2  TIP41-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195153.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VXY4, Q9SYZ2, Q9XGU2
      UniProtKB/TrEMBL
      A0A178V0N1, A0A5S9XYI8, A0A7G2F367
      Conserved Domains (1) summary
      pfam04176
      Location:62 → 246
      TIP41; TIP41-like family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VXY4.1

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