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    Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829892, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT4G37380
    Locus tag
    AT4G37380
    See related
    Araport:AT4G37380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6G17.30; F6G17_30
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (17571816..17573938, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 81, subfamily D, polypeptide 2 Neighboring gene cytochrome P450, family 81, subfamily D, polypeptide 8 Neighboring gene Auxin-responsive GH3 family protein Neighboring gene cytochrome P450, family 81, subfamily F, polypeptide 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of two pentatricopeptide repeat genes required for RNA editing and zinc binding by C-terminal cytidine deaminase-like domains. Hayes ML, et al. J Biol Chem, 2013 Dec 20. PMID 24194514, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    NM_119901.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chloroplast RNA modification IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_195454.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G66520.1); Has 33786 Blast hits to 13504 proteins in 252 species: Archae - 0; Bacteria - 14; Metazoa - 55; Fungi - 76; Plants - 33202; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17571816..17573938 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119901.2 → NP_195454.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195454.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SZT8
      UniProtKB/TrEMBL
      A0A5S9XZF1
      Conserved Domains (5) summary
      PLN03077
      Location:20 → 630
      PLN03077; Protein ECB2; Provisional
      TIGR00756
      Location:196 → 224
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:327 → 354
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:224 → 253
      PPR; PPR repeat
      pfam14432
      Location:498 → 621
      DYW_deaminase; DYW family of nucleic acid deaminases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SZT8.1

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