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    Pre-mRNA cleavage complex II protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830968, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pre-mRNA cleavage complex II protein family
    Primary source
    TAIR:AT5G11010
    Locus tag
    AT5G11010
    See related
    Araport:AT5G11010
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T30N20.280; T30N20_280
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (3483632..3486267)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene SAUR-like auxin-responsive protein family Neighboring gene hypothetical protein (DUF868) Neighboring gene Protein kinase superfamily protein Neighboring gene aberrant root formation protein Neighboring gene TRS120

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
    2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001343144.1
    NM_001343145.1
    NM_121139.1
    NM_180474.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables polynucleotide 5'-hydroxyl-kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA processing ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pre-mRNA cleavage complex II protein family
    NP_001318534.1
    • Pre-mRNA cleavage complex II protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pre-mRNA cleavage complex II Clp1 (InterPro:IPR010655); BEST Arabidopsis thaliana protein match is: CLP-similar protein 3 (TAIR:AT3G04680.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_568243.1
    • Pre-mRNA cleavage complex II protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pre-mRNA cleavage complex II Clp1 (InterPro:IPR010655); BEST Arabidopsis thaliana protein match is: CLP-similar protein 3 (TAIR:AT3G04680.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_850805.1
    • Pre-mRNA cleavage complex II protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pre-mRNA cleavage complex II Clp1 (InterPro:IPR010655); BEST Arabidopsis thaliana protein match is: CLP-similar protein 3 (TAIR:AT3G04680.2); Has 601 Blast hits to 594 proteins in 238 species: Archae - 54; Bacteria - 6; Metazoa - 220; Fungi - 142; Plants - 83; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3483632..3486267
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343144.1 → NP_001318534.1  Pre-mRNA cleavage complex II protein family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VYP6, Q945L9, Q9LEU0
      UniProtKB/TrEMBL
      A0A178UTG2, A0A5S9Y3U0, A0A7G2F6L6
      Conserved Domains (2) summary
      COG1341
      Location:10 → 345
      Grc3; Polynucleotide 5'-kinase, involved in rRNA processing [Translation, ribosomal structure and biogenesis]
      pfam16575
      Location:36 → 174
      CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop

    2. NM_180474.2 → NP_850805.1  Pre-mRNA cleavage complex II protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850805.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VYP6, Q945L9, Q9LEU0
      UniProtKB/TrEMBL
      A0A178UTG2, A0A5S9Y3U0, A0A7G2F6L6
      Conserved Domains (2) summary
      COG1341
      Location:10 → 345
      Grc3; Polynucleotide 5'-kinase, involved in rRNA processing [Translation, ribosomal structure and biogenesis]
      pfam16575
      Location:36 → 174
      CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop

    3. NM_001343145.1 → NP_001330301.1  Pre-mRNA cleavage complex II protein family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VYP6, Q945L9, Q9LEU0
      UniProtKB/TrEMBL
      A0A178UTG2, A0A5S9Y3U0, A0A7G2F6L6
      Conserved Domains (2) summary
      COG1341
      Location:10 → 345
      Grc3; Polynucleotide 5'-kinase, involved in rRNA processing [Translation, ribosomal structure and biogenesis]
      pfam16575
      Location:36 → 174
      CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop

    4. NM_121139.1 → NP_568243.1  Pre-mRNA cleavage complex II protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568243.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2F6L6
      Conserved Domains (1) summary
      pfam16575
      Location:36 → 174
      CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VYP6.1

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