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    Leucine-rich repeat (LRR) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832292, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Leucine-rich repeat (LRR) family protein
    Primary source
    TAIR:AT5G22320
    Locus tag
    AT5G22320
    See related
    Araport:AT5G22320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MWD9.11; MWD9_11
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (7387985..7390613, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene trichohyalin-like protein Neighboring gene tRNA-Gln Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene NF-kappa-B inhibitor-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_122137.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Leucine-rich repeat (LRR) family protein
    NP_001190363.1
    • Leucine-rich repeat (LRR) family protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 4 (TAIR:AT4G35470.1).
    NP_568416.1
    • Leucine-rich repeat (LRR) family protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Outer arm dynein light chain 1 protein (TAIR:AT4G03260.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      7387985..7390613 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203434.1 → NP_001190363.1  Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190363.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K9U4
      Conserved Domains (3) summary
      cd00116
      Location:21 → 226
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:21 → 42
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:41 → 97
      LRR_8; Leucine rich repeat

    2. NM_122137.4 → NP_568416.1  Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568416.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y680, A0A654G338, Q9FMS0
      Conserved Domains (2) summary
      sd00033
      Location:21 → 42
      LRR_RI; leucine-rich repeat [structural motif]
      cd21340
      Location:52 → 240
      PPP1R42; protein phosphatase 1 regulatory subunit 42
    Nucleotide Protein
    Heading Accession and Version

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