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    RLT2 Homeodomain-like transcriptional regulator [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834441, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RLT2
    Official Full Name
    Homeodomain-like transcriptional regulator
    Primary source
    TAIR:AT5G44180
    Locus tag
    AT5G44180
    See related
    Araport:AT5G44180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MLN1.10; MLN1_10; RINGLET 2
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    Genomic context

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    See RLT2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    19
    Sequence:
    Chromosome: 5; NC_003076.8 (17782428..17790234)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene C2H2-like zinc finger protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene GOLDEN2-like 2 Neighboring gene CAP-binding protein 20

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene networks and chromatin and transcriptional regulation of the phaseolin promoter in Arabidopsis. Sundaram S, et al. Plant Cell, 2013 Jul. PMID 23872538, Free PMC Article
    2. Imitation Switch chromatin remodeling factors and their interacting RINGLET proteins act together in controlling the plant vegetative phase in Arabidopsis. Li G, et al. Plant J, 2012 Oct. PMID 22694359
    3. SLIDE, the protein interacting domain of Imitation Switch remodelers, binds DDT-domain proteins of different subfamilies in chromatin remodeling complexes. Dong J, et al. J Integr Plant Biol, 2013 Oct. PMID 23691993
    4. A plant-specific SWR1 chromatin-remodeling complex couples histone H2A.Z deposition with nucleosome sliding. Luo YX, et al. EMBO J, 2020 Apr 1. PMID 32115743, Free PMC Article
    5. Promoter-based integration in plant defense regulation. Li B, et al. Plant Physiol, 2014 Dec. PMID 25352272, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NM_001203541.1
    NM_001344536.1
    NM_123785.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within vegetative to reproductive phase transition of meristem IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ISWI-type complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Homeodomain-like transcriptional regulator
    NP_001190470.1
    • Homeodomain-like transcriptional regulator; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DDT domain superfamily (InterPro:IPR018501), Homeobox (InterPro:IPR001356), DDT domain (InterPro:IPR004022), Homeodomain-like (InterPro:IPR009057), DDT domain, subgroup (InterPro:IPR018500), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox-1 (TAIR:AT1G28420.1).
    NP_001318738.1
    • Homeodomain-like transcriptional regulator; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DDT domain superfamily (InterPro:IPR018501), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), DDT domain, subgroup (InterPro:IPR018500), DDT domain (InterPro:IPR004022), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox-1 (TAIR:AT1G28420.1); Has 67503 Blast hits to 37811 proteins in 2117 species: Archae - 251; Bacteria - 7621; Metazoa - 32181; Fungi - 4940; Plants - 2680; Viruses - 355; Other Eukaryotes - 19475 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      17782428..17790234
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344536.1 → NP_001318738.1  Homeodomain-like transcriptional regulator [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94B27, Q9FFH1
      UniProtKB/TrEMBL
      A0A654G7W0

    2. NM_123785.1 → NP_199231.1  Homeodomain-like transcriptional regulator [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199231.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94B27, Q9FFH1
      UniProtKB/TrEMBL
      A0A654G7W0
      Conserved Domains (9) summary
      pfam00046
      Location:20 → 73
      Homeobox; Homeobox domain
      pfam02791
      Location:515 → 570
      DDT; DDT domain
      pfam05066
      Location:696 → 765
      HARE-HTH; HB1, ASXL, restriction endonuclease HTH domain
      pfam12474
      Location:319 → 462
      PKK; Polo kinase kinase
      pfam15612
      Location:902 → 945
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
      pfam15613
      Location:1072 → 1109
      WHIM2; WSTF, HB1, Itc1p, MBD9 motif 2
      pfam15614
      Location:1111 → 1144
      WHIM3; WSTF, HB1, Itc1p, MBD9 motif 3
      cd16269
      Location:420 → 433
      GBP_C; coiled coil [structural motif]
      cl20817
      Location:336 → 452
      GBP_C; Guanylate-binding protein, C-terminal domain

    3. NM_001203541.1 → NP_001190470.1  Homeodomain-like transcriptional regulator [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190470.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G7W0, F4K8S9
      Conserved Domains (8) summary
      pfam00046
      Location:20 → 73
      Homeobox; Homeobox domain
      pfam02791
      Location:515 → 570
      DDT; DDT domain
      pfam05066
      Location:696 → 765
      HARE-HTH; HB1, ASXL, restriction endonuclease HTH domain
      pfam12474
      Location:319 → 462
      PKK; Polo kinase kinase
      pfam15612
      Location:902 → 945
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
      pfam15613
      Location:1072 → 1109
      WHIM2; WSTF, HB1, Itc1p, MBD9 motif 2
      cd16269
      Location:420 → 433
      GBP_C; coiled coil [structural motif]
      cl20817
      Location:336 → 452
      GBP_C; Guanylate-binding protein, C-terminal domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FFH1.1

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