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    XRI1 x-ray induced transcript 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834930, updated on 18-Sep-2024

    Summary

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    Official Symbol
    XRI1
    Official Full Name
    x-ray induced transcript 1
    Primary source
    TAIR:AT5G48720
    Locus tag
    AT5G48720
    See related
    Araport:AT5G48720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K24G6.5; K24G6_5; X-RAY INDUCED TRANSCRIPT; X-RAY INDUCED TRANSCRIPT 1; XRI
    Summary
    Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray. Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation.
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    Genomic context

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    See XRI1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (19758881..19762015)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Ubiquitin-like superfamily protein Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel ATM-dependent X-ray-inducible gene is essential for both plant meiosis and gametogenesis. Dean PJ, et al. Plant J, 2009 Jun. PMID 19187040, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. XRI1 is a novel DNA repair factor that is essential for both meiosis and male gametogenesis in plants.
      Title: A novel ATM-dependent X-ray-inducible gene is essential for both plant meiosis and gametogenesis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001161298.2
    NM_001344803.1
    NM_001344804.1
    NM_124249.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA repair IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within female meiotic nuclear division IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within male meiotic nuclear division IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to X-ray IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    x-ray induced transcript 1
    NP_001154770.1
    • X-RAY INDUCED TRANSCRIPT 1 (XRI1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA repair, female meiosis, response to X-ray, pollen development, male meiosis; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01990.1); Has 123 Blast hits to 123 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_199683.2
    • X-RAY INDUCED TRANSCRIPT 1 (XRI1); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01990.1); Has 117 Blast hits to 117 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19758881..19762015
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001161298.2 → NP_001154770.1  x-ray induced transcript 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154770.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NLW5, Q9FKC4
      UniProtKB/TrEMBL
      A0A178UAM4, A0A178UAQ4, A0A5S9YC66

    2. NM_001344803.1 → NP_001330159.1  x-ray induced transcript 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UAM4

    3. NM_001344804.1 → NP_001330160.1  x-ray induced transcript 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NLW5, Q9FKC4
      UniProtKB/TrEMBL
      A0A178UAM4, A0A178UAQ4, A0A5S9YC66

    4. NM_124249.3 → NP_199683.2  x-ray induced transcript 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199683.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UAM4
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NLW5.2

    Gene LinkOut

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