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    Ribosomal protein L31e family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835772, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal protein L31e family protein
    Primary source
    TAIR:AT5G56710
    Locus tag
    AT5G56710
    See related
    Araport:AT5G56710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MIK19.16; MIK19_16
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (22943707..22944993, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene FBD, F-box and Leucine Rich Repeat domains containing protein Neighboring gene FBD / Leucine Rich Repeat domains containing protein Neighboring gene Lactate/malate dehydrogenase family protein Neighboring gene Insulinase (Peptidase family M16) protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Chang IF, et al. Plant Physiol, 2005 Mar. PMID 15734919, Free PMC Article
    2. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
    3. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
    4. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169
    5. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001085289.1
    NM_125054.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    part_of cytosolic large ribosomal subunit HDA PubMed 
    located_in cytosolic ribosome HDA PubMed 
    located_in plant-type cell wall HDA PubMed 
    located_in plasmodesma HDA PubMed 
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    Ribosomal protein L31e family protein
    NP_001078758.1
    • Ribosomal protein L31e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L31e (InterPro:IPR000054); BEST Arabidopsis thaliana protein match is: Ribosomal protein L31e family protein (TAIR:AT4G26230.1); Has 842 Blast hits to 842 proteins in 260 species: Archae - 2; Bacteria - 0; Metazoa - 430; Fungi - 129; Plants - 169; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
    NP_200482.1
    • Ribosomal protein L31e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L31e (InterPro:IPR000054), Ribosomal protein L31e, conserved site (InterPro:IPR020052); BEST Arabidopsis thaliana protein match is: Ribosomal protein L31e family protein (TAIR:AT4G26230.1); Has 1085 Blast hits to 1085 proteins in 349 species: Archae - 139; Bacteria - 2; Metazoa - 457; Fungi - 145; Plants - 170; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22943707..22944993 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125054.3 → NP_200482.1  Ribosomal protein L31e family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200482.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P51420, Q8LEJ0, Q9FJU1
      UniProtKB/TrEMBL
      A0A178UUH9, A0A5S9YFS0
      Conserved Domains (1) summary
      pfam01198
      Location:10 → 91
      Ribosomal_L31e; Ribosomal protein L31e

    2. NM_001085289.1 → NP_001078758.1  Ribosomal protein L31e family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078758.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MR49
      Conserved Domains (1) summary
      pfam01198
      Location:10 → 56
      Ribosomal_L31e; Ribosomal protein L31e
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P51420.2

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