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    Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domain [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836543, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domain
    Primary source
    TAIR:AT5G64220
    Locus tag
    AT5G64220
    See related
    Araport:AT5G64220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    calmodulin-binding transcription activator 2; CAMTA2; MSJ1.6; MSJ1_6
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    13
    Sequence:
    Chromosome: 5; NC_003076.8 (25686193..25692339)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene neuronal PAS domain protein Neighboring gene serine/arginine-rich splicing factor-like protein, putative Neighboring gene alternative oxidase 2 Neighboring gene 1,8-cineole synthase Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Kidokoro S, et al. Plant Cell, 2017 Apr. PMID 28351986, Free PMC Article
    2. SENSITIVE TO PROTON RHIZOTOXICITY1, CALMODULIN BINDING TRANSCRIPTION ACTIVATOR2, and other transcription factors are involved in ALUMINUM-ACTIVATED MALATE TRANSPORTER1 expression. Tokizawa M, et al. Plant Physiol, 2015 Mar. PMID 25627216, Free PMC Article
    3. Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana. Jones AM, et al. J Proteomics, 2009 Apr 13. PMID 19245862
    4. Roles of CAMTA transcription factors and salicylic acid in configuring the low-temperature transcriptome and freezing tolerance of Arabidopsis. Kim Y, et al. Plant J, 2013 Aug. PMID 23581962
    5. A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants. Yang T, et al. J Biol Chem, 2002 Nov 22. PMID 12218065

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR2 was found to be an activator of AtALMT1 expression.[CAMTA2]
      Title: SENSITIVE TO PROTON RHIZOTOXICITY1, CALMODULIN BINDING TRANSCRIPTION ACTIVATOR2, and other transcription factors are involved in ALUMINUM-ACTIVATED MALATE TRANSPORTER1 expression.
    2. CAMTA1, CAMTA2 and CAMTA3 function together to inhibit salicylic acid biosynthesis at warm temperature (22 degrees C). CAMTA1, CAMTA2 and CAMTA3 function together to positively regulate CBF1, CBF2 and CBF3 and freezing tolerance. [CAMTA2]
      Title: Roles of CAMTA transcription factors and salicylic acid in configuring the low-temperature transcriptome and freezing tolerance of Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001037058.2
    NM_125818.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to aluminum ion IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cold IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domain
    NP_001032135.1
    • Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains; FUNCTIONS IN: calmodulin binding, transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), CG-1 (InterPro:IPR005559), Ankyrin repeat (InterPro:IPR002110), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ethylene induced calmodulin binding protein (TAIR:AT5G09410.2); Has 14537 Blast hits to 9093 proteins in 523 species: Archae - 46; Bacteria - 905; Metazoa - 8300; Fungi - 946; Plants - 937; Viruses - 67; Other Eukaryotes - 3336 (source: NCBI BLink).
    NP_201227.3
    • Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains; FUNCTIONS IN: calmodulin binding, transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), CG-1 (InterPro:IPR005559), IQ calmodulin-binding region (InterPro:IPR000048), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ethylene induced calmodulin binding protein (TAIR:AT5G09410.2); Has 14517 Blast hits to 9081 proteins in 522 species: Archae - 46; Bacteria - 904; Metazoa - 8296; Fungi - 946; Plants - 937; Viruses - 67; Other Eukaryotes - 3321 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25686193..25692339
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001037058.2 → NP_001032135.1  Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domain [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001032135.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WNN4, Q6NPP4, Q9FMG3
      UniProtKB/TrEMBL
      A0A178UNU6, A0A5S9YH26, A0A7G2FKE6
      Conserved Domains (5) summary
      smart00015
      Location:893 → 914
      IQ; Calmodulin-binding motif
      COG0666
      Location:598 → 763
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:661 → 692
      ANK; ANK repeat [structural motif]
      pfam03859
      Location:23 → 135
      CG-1; CG-1 domain
      pfam12796
      Location:641 → 720
      Ank_2; Ankyrin repeats (3 copies)

    2. NM_125818.3 → NP_201227.3  Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domain [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201227.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WNN4, Q6NPP4, Q9FMG3
      UniProtKB/TrEMBL
      A0A178UNU6, A0A5S9YH26, A0A7G2FKE6
      Conserved Domains (5) summary
      smart00015
      Location:893 → 914
      IQ; Calmodulin-binding motif
      COG0666
      Location:598 → 763
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:661 → 692
      ANK; ANK repeat [structural motif]
      pfam03859
      Location:23 → 135
      CG-1; CG-1 domain
      pfam12796
      Location:641 → 720
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NPP4.1

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