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    RBP1 RNA-binding protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842216, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RBP1
    Official Full Name
    RNA-binding protein 1
    Primary source
    TAIR:AT1G58470
    Locus tag
    AT1G58470
    See related
    Araport:AT1G58470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATRBP1; F9K23.11; F9K23_11; RNA-binding protein 1
    Summary
    encodes an RNA-binding protein
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    Genomic context

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    See RBP1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (21726963..21728802)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene GDSL-like lipase/acylhydrolase superfamily protein Neighboring gene GDSL-like lipase/acylhydrolase superfamily protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The HPE1 RNA-binding protein modulates chloroplast RNA editing to promote photosynthesis under cold stress in Arabidopsis. Zeng Y, et al. FEBS Lett, 2024 Aug. PMID 38977940
    2. AtRBP1, which encodes an RNA-binding protein containing RNA-recognition motifs, regulates root growth in Arabidopsis thaliana. Shida T, et al. Plant Physiol Biochem, 2015 Jul. PMID 25913162
    3. An RNA-binding protein, AtRBP1, is expressed in actively proliferative regions in Arabidopsis thaliana. Suzuki M, et al. Plant Cell Physiol, 2000 Mar. PMID 10805591
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The HPE1 RNA-binding protein modulates chloroplast RNA editing to promote photosynthesis under cold stress in Arabidopsis.
      Title: The HPE1 RNA-binding protein modulates chloroplast RNA editing to promote photosynthesis under cold stress in Arabidopsis.
    2. Tight regulation of the AtRBP1 transcript may be required for normal root growth...In vivo selection of RNAs bound to AtRBP1 suggests that transcripts of At3g06780, At4g15910, At5g11760 and At5g07350 are target RNAs of AtRBP1.
      Title: AtRBP1, which encodes an RNA-binding protein containing RNA-recognition motifs, regulates root growth in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001333838.1
    NM_104627.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables single-stranded RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA-binding protein 1
    NP_176143.1
    • RNA-binding protein 1 (RBP1); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G55550.4); Has 25375 Blast hits to 16260 proteins in 820 species: Archae - 0; Bacteria - 1958; Metazoa - 13222; Fungi - 2417; Plants - 5451; Viruses - 0; Other Eukaryotes - 2327 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      21726963..21728802
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104627.2 → NP_176143.1  RNA-binding protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176143.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C652, Q9SM01
      UniProtKB/TrEMBL
      G1JSI0
      Conserved Domains (1) summary
      cl17169
      Location:118 → 197
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. NM_001333838.1 → NP_001320402.1  RNA-binding protein 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C652, Q9SM01
      UniProtKB/TrEMBL
      G1JSI0
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C652.1

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