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    Shugoshin C terminus [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830311, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Shugoshin C terminus
    Primary source
    TAIR:AT5G04320
    Locus tag
    AT5G04320
    See related
    Araport:AT5G04320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtSGO2; SGO2; SHUGOSHIN 2; T19N18.50; T19N18_50
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    15
    Sequence:
    Chromosome: 5; NC_003076.8 (1209197..1212578)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene kow domain-containing transcription factor 1 Neighboring gene Pectin lyase-like superfamily protein Neighboring gene Cytochrome P450 superfamily protein Neighboring gene 6 Neighboring gene Plant self-incompatibility protein S1 family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SHUGOSHINs and PATRONUS protect meiotic centromere cohesion in Arabidopsis thaliana. Zamariola L, et al. Plant J, 2014 Mar. PMID 24506176
    2. Centromeric cohesion is protected twice at meiosis, by SHUGOSHINs at anaphase I and by PATRONUS at interkinesis. Cromer L, et al. Curr Biol, 2013 Nov 4. PMID 24206843
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001085057.2
    NM_001342764.1
    NM_001342765.1
    NM_120514.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in maintenance of meiotic sister chromatid cohesion IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within maintenance of meiotic sister chromatid cohesion IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in meiotic sister chromatid segregation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chromosome, centromeric region IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Shugoshin C terminus
    NP_001078526.1
    • Shugoshin C terminus; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: meiotic chromosome segregation; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Shugoshin, C-terminal (InterPro:IPR011515); BEST Arabidopsis thaliana protein match is: Shugoshin C terminus (TAIR:AT3G10440.1); Has 2871 Blast hits to 2420 proteins in 372 species: Archae - 12; Bacteria - 318; Metazoa - 1409; Fungi - 181; Plants - 120; Viruses - 4; Other Eukaryotes - 827 (source: NCBI BLink).
    NP_196052.2
    • Shugoshin C terminus; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: meiotic chromosome segregation; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAP1, N-terminal (InterPro:IPR006933), Shugoshin, C-terminal (InterPro:IPR011515); BEST Arabidopsis thaliana protein match is: Shugoshin C terminus (TAIR:AT3G10440.1); Has 1148 Blast hits to 928 proteins in 218 species: Archae - 2; Bacteria - 134; Metazoa - 504; Fungi - 92; Plants - 86; Viruses - 0; Other Eukaryotes - 330 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1209197..1212578
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342763.1 → NP_001331957.1  Shugoshin C terminus [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BFE9, A0A5S9Y3H9

    2. NM_001085057.2 → NP_001078526.1  Shugoshin C terminus [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078526.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A1L4U8, Q0WTB8
      UniProtKB/TrEMBL
      A0A5S9Y3H9

    3. NM_001342764.1 → NP_001331956.1  Shugoshin C terminus [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A1L4U8, Q0WTB8
      UniProtKB/TrEMBL
      A0A5S9Y3H9

    4. NM_001342765.1 → NP_001331955.1  Shugoshin C terminus [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A1L4U8, Q0WTB8
      UniProtKB/TrEMBL
      A0A5S9Y3H9

    5. NM_120514.5 → NP_196052.2  Shugoshin C terminus [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196052.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UF10
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0WTB8.1

    Gene LinkOut

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