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    PIRL6 plant intracellular ras group-related LRR 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816450, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PIRL6
    Official Full Name
    plant intracellular ras group-related LRR 6
    Primary source
    TAIR:AT2G19330
    Locus tag
    AT2G19330
    See related
    Araport:AT2G19330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F27F23.13; F27F23_13; plant intracellular ras group-related LRR 6
    Summary
    Encodes PIRL6, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.
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    Genomic context

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    See PIRL6 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (8372861..8374453)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene HSP20-like chaperones superfamily protein Neighboring gene uncharacterized protein Neighboring gene Oligosaccharyltransferase complex/magnesium transporter family protein Neighboring gene ncRNA Neighboring gene transmembrane protein (DUF872)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis PIRL6 Is Essential for Male and Female Gametogenesis and Is Regulated by Alternative Splicing. Forsthoefel NR, et al. Plant Physiol, 2018 Nov. PMID 30206104, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_127490.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    plant intracellular ras group-related LRR 6
    NP_179523.1
    • plant intracellular ras group-related LRR 6 (PIRL6); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 7 (TAIR:AT4G29880.1); Has 63918 Blast hits to 28732 proteins in 1043 species: Archae - 35; Bacteria - 6419; Metazoa - 27911; Fungi - 2141; Plants - 23572; Viruses - 21; Other Eukaryotes - 3819 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8372861..8374453
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127490.2 → NP_179523.1  plant intracellular ras group-related LRR 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179523.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64566
      UniProtKB/TrEMBL
      A0A178VST5, A0A5S9WZ92, A0A654EVQ7
      Conserved Domains (2) summary
      PRK15370
      Location:55 → 307
      PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
      sd00033
      Location:62 → 84
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O64566.1

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