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    LARP6b RNA-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819002, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LARP6b
    Official Full Name
    RNA-binding protein
    Primary source
    TAIR:AT2G43970
    Locus tag
    AT2G43970
    See related
    Araport:AT2G43970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtLARP6b; F6E13.10; La related protein 6b
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    Genomic context

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    See LARP6b in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Sequence:
    Chromosome: 2; NC_003071.7 (18205235..18208218, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene chloroplast outer envelope protein 37 Neighboring gene SWAP (Suppressor-of-White-APricot)/surp domain-containing protein Neighboring gene inositol 1,3,4-trisphosphate 5/6-kinase 4 Neighboring gene GPI-anchored adhesin-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The association of a La module with the PABP-interacting motif PAM2 is a recurrent evolutionary process that led to the neofunctionalization of La-related proteins. Merret R, et al. RNA, 2013 Jan. PMID 23148093, Free PMC Article
    2. Substrates related to chromatin and to RNA-dependent processes are modified by Arabidopsis SUMO isoforms that differ in a conserved residue with influence on desumoylation. Budhiraja R, et al. Plant Physiol, 2009 Mar. PMID 19151129, Free PMC Article
    3. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    4. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    5. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_129959.3
    NM_180075.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RNA-binding protein
    NP_566004.1
    • RNA-binding protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: ribonucleoprotein complex, nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344); BEST Arabidopsis thaliana protein match is: RNA-binding protein (TAIR:AT3G19090.1); Has 5436 Blast hits to 4197 proteins in 373 species: Archae - 4; Bacteria - 353; Metazoa - 1802; Fungi - 477; Plants - 426; Viruses - 18; Other Eukaryotes - 2356 (source: NCBI BLink).
    NP_850406.1
    • RNA-binding protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: ribonucleoprotein complex, nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344); BEST Arabidopsis thaliana protein match is: RNA-binding protein (TAIR:AT3G19090.1); Has 5536 Blast hits to 4258 proteins in 377 species: Archae - 4; Bacteria - 395; Metazoa - 1833; Fungi - 479; Plants - 433; Viruses - 20; Other Eukaryotes - 2372 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18205235..18208218 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180075.2 → NP_850406.1  RNA-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850406.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VPU8
      Conserved Domains (2) summary
      cd08033
      Location:194 → 270
      LARP_6; La RNA-binding domain of La-related protein 6
      cl17169
      Location:285 → 364
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. NM_129959.3 → NP_566004.1  RNA-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566004.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0Z3E5, F4IT26, O80567, Q945N2, Q9C5X1
      UniProtKB/TrEMBL
      A0A178VPU8
      Conserved Domains (2) summary
      cd08033
      Location:194 → 270
      LARP_6; La RNA-binding domain of La-related protein 6
      cd12288
      Location:285 → 380
      RRM_La_like_plant; RNA recognition motif in plant proteins related to the La autoantigen
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O80567.2

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