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    Late embryogenesis abundant protein, group 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819011, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Late embryogenesis abundant protein, group 2
    Primary source
    TAIR:AT2G44060
    Locus tag
    AT2G44060
    See related
    Araport:AT2G44060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6E13.19; late embryogenesis abundant 26; LEA26
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (18226263..18228293)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Dihydrodipicolinate reductase, bacterial/plant Neighboring gene 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase Neighboring gene Ribosomal protein L2 family Neighboring gene NagB/RpiA/CoA transferase-like superfamily protein Neighboring gene ARGOS-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis thaliana Nudix hydrolase AtNUDT7 forms complexes with the regulatory RACK1A protein and Ggamma subunits of the signal transducing heterotrimeric G protein. Olejnik K, et al. Acta Biochim Pol, 2011. PMID 22068106
    2. The ubiquitous distribution of late embryogenesis abundant proteins across cell compartments in Arabidopsis offers tailored protection against abiotic stress. Candat A, et al. Plant Cell, 2014 Jul. PMID 25005920, Free PMC Article
    3. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    4. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812
    5. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_129968.4
    NM_180077.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in response to desiccation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in cytosol HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    Late embryogenesis abundant protein, group 2
    NP_181934.1
    • Late embryogenesis abundant protein, group 2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion, response to desiccation, embryo development ending in seed dormancy; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Water stress and hypersensitive response domain (InterPro:IPR013990), Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein (TAIR:AT1G01470.1); Has 294 Blast hits to 286 proteins in 78 species: Archae - 4; Bacteria - 52; Metazoa - 0; Fungi - 0; Plants - 235; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    NP_850408.1
    • Late embryogenesis abundant protein, group 2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion, response to desiccation, embryo development ending in seed dormancy; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Water stress and hypersensitive response domain (InterPro:IPR013990), Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein (TAIR:AT1G01470.1); Has 294 Blast hits to 286 proteins in 78 species: Archae - 4; Bacteria - 52; Metazoa - 0; Fungi - 0; Plants - 235; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18226263..18228293
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129968.4 → NP_181934.1  Late embryogenesis abundant protein, group 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181934.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VUS5, O80576, Q8LCW6
      Conserved Domains (1) summary
      smart00769
      Location:69 → 168
      WHy; Water Stress and Hypersensitive response

    2. NM_180077.2 → NP_850408.1  Late embryogenesis abundant protein, group 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850408.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VUS5, O80576, Q8LCW6
      Conserved Domains (1) summary
      smart00769
      Location:69 → 168
      WHy; Water Stress and Hypersensitive response
    Nucleotide Protein
    Heading Accession and Version

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