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    ARABIDILLO-1 ARABIDILLO-1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819099, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ARABIDILLO-1
    Official Full Name
    ARABIDILLO-1
    Primary source
    TAIR:AT2G44900
    Locus tag
    AT2G44900
    See related
    Araport:AT2G44900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDILLO1; F-box Armadillo protein 1; T13E15.9
    Summary
    ARABIDILLO-1 and its homolog, ARABIDILLO -2, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-1 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-1-overexpressing lines produce more lateral roots than wild-type seedlings.
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    Genomic context

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    See ARABIDILLO-1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Sequence:
    Chromosome: 2; NC_003071.7 (18511313..18516468, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein Neighboring gene cytochrome P450, family 704, subfamily A, polypeptide 1 Neighboring gene ncRNA Neighboring gene homeobox-leucine zipper protein 4 Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Armadillo-related proteins promote lateral root development in Arabidopsis. Coates JC, et al. Proc Natl Acad Sci U S A, 2006 Jan 31. PMID 16434475, Free PMC Article
    2. ARABIDILLO proteins have a novel and conserved domain structure important for the regulation of their stability. Nibau C, et al. Plant Mol Biol, 2011 Jan. PMID 21052782
    3. AtMYB93 is a novel negative regulator of lateral root development in Arabidopsis. Gibbs DJ, et al. New Phytol, 2014 Sep. PMID 24902892, Free PMC Article
    4. PAH-domain-specific interactions of the Arabidopsis transcription coregulator SIN3-LIKE1 (SNL1) with telomere-binding protein 1 and ALWAYS EARLY2 Myb-DNA binding factors. Bowen AJ, et al. J Mol Biol, 2010 Feb 5. PMID 19962994
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data show that ARABIDILLO-1 (At2g44900) protein is associated with ubiquitin and is turned over by the proteasome.
      Title: ARABIDILLO proteins have a novel and conserved domain structure important for the regulation of their stability.
    2. ARABIDILLO-1 functions redundantly with Arabidillo-2 to promote lateral root development in Arabidopsis. [ARABIDILLO-1]
      Title: Armadillo-related proteins promote lateral root development in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    • At2g44900_Arabidopsis_lyrata_ssp._lyrata_CAN3 (e-PCR)
    • At2g44900_Arabidopsis_lyrata_ssp._petraea_GER10 (e-PCR)

    Homology

    NM_001337106.1
    NM_130054.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription factor binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within lateral root development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within lateral root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ARABIDILLO-1
    NP_566029.1
    • ARABIDILLO-1 (ARABIDILLO-1); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: lateral root development; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARABIDILLO-2 (TAIR:AT3G60350.1); Has 10074 Blast hits to 5287 proteins in 284 species: Archae - 0; Bacteria - 24; Metazoa - 4121; Fungi - 736; Plants - 4117; Viruses - 0; Other Eukaryotes - 1076 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18511313..18516468 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130054.3 → NP_566029.1  ARABIDILLO-1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566029.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22161
      UniProtKB/TrEMBL
      A0A178VSY4, A0A5S9X728, A0A654F1Z7
      Conserved Domains (6) summary
      cd09293
      Location:143 → 225
      AMN1; Antagonist of mitotic exit network protein 1
      PLN03200
      Location:608 → 784
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00034
      Location:134 → 159
      LRR_AMN1; leucine-rich repeat [structural motif]
      sd00043
      Location:612 → 637
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:599 → 638
      Arm; Armadillo/beta-catenin-like repeat
      pfam12937
      Location:47 → 91
      F-box-like

    2. NM_001337106.1 → NP_001325003.1  ARABIDILLO-1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22161
      UniProtKB/TrEMBL
      A0A178VSY4, A0A5S9X728, A0A654F1Z7
      Conserved Domains (6) summary
      cd09293
      Location:143 → 225
      AMN1; Antagonist of mitotic exit network protein 1
      PLN03200
      Location:608 → 784
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00034
      Location:134 → 159
      LRR_AMN1; leucine-rich repeat [structural motif]
      sd00043
      Location:612 → 637
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:599 → 638
      Arm; Armadillo/beta-catenin-like repeat
      pfam12937
      Location:47 → 91
      F-box-like
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O22161.1

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