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    SUR1 Tyrosine transaminase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816585, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SUR1
    Official Full Name
    Tyrosine transaminase family protein
    Primary source
    TAIR:AT2G20610
    Locus tag
    AT2G20610
    See related
    Araport:AT2G20610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ABERRANT LATERAL ROOT FORMATION 1; ALF1; F23N11.7; F23N11_7; HLS3; HOOKLESS 3; ROOTY; ROOTY 1; RTY; RTY1; SUPERROOT 1
    Summary
    Confers auxin overproduction. Mutants have an over-proliferation of lateral roots. Encodes a C-S lyase involved in converting S-alkylthiohydroximate to thiohydroximate in glucosinolate biosynthesis.
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    Genomic context

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    See SUR1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (8877887..8880440, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Plant thionin family protein Neighboring gene DNA-binding storekeeper protein-related transcriptional regulator Neighboring gene QWRF motif protein (DUF566)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Heterologous expression of Arabidopsis thaliana rty gene in strawberry (Fragaria × ananassa Duch.) improves drought tolerance. Li M, et al. BMC Plant Biol, 2021 Jan 21. PMID 33478380, Free PMC Article
    2. Structure-Function Analysis of Interallelic Complementation in ROOTY Transheterozygotes. Brumos J, et al. Plant Physiol, 2020 Jul. PMID 32350121, Free PMC Article
    3. REVERSAL OF RDO5 1, a Homolog of Rice Seed Dormancy4, Interacts with bHLH57 and Controls ABA Biosynthesis and Seed Dormancy in Arabidopsis. Liu F, et al. Plant Cell, 2020 Jun. PMID 32213638, Free PMC Article
    4. Auxin, ethylene and brassinosteroids: tripartite control of growth in the Arabidopsis hypocotyl. De Grauwe L, et al. Plant Cell Physiol, 2005 Jun. PMID 15851402
    5. Arabidopsis mutants in the C-S lyase of glucosinolate biosynthesis establish a critical role for indole-3-acetaldoxime in auxin homeostasis. Mikkelsen MD, et al. Plant J, 2004 Mar. PMID 14871316

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Heterologous expression of Arabidopsis thaliana rty gene in strawberry (Fragaria x ananassa Duch.) improves drought tolerance.
      Title: Heterologous expression of Arabidopsis thaliana rty gene in strawberry (Fragaria × ananassa Duch.) improves drought tolerance.
    2. Structure-Function Analysis of Interallelic Complementation in ROOTY Transheterozygotes.
      Title: Structure-Function Analysis of Interallelic Complementation in ROOTY Transheterozygotes.
    3. The identification of a novel microRNA, miR10515, which targets superroot1 (SUR1), the gene encoding an indole glucosinolate biosynthetic enzyme, is reported.
      Title: A Novel Arabidopsis microRNA promotes IAA biosynthesis via the indole-3-acetaldoxime pathway by suppressing superroot1.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_127622.4
    NM_201760.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables S-alkylthiohydroximate lyase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables carbon-sulfur lyase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within adventitious root development TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in amino acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within defense response to fungus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within glucosinolate biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within indoleacetic acid biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of cell growth by extracellular stimulus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    Tyrosine transaminase family protein
    NP_179650.1
    • SUPERROOT 1 (SUR1); FUNCTIONS IN: S-alkylthiohydroximate lyase activity, carbon-sulfur lyase activity, transaminase activity; INVOLVED IN: regulation of cell growth by extracellular stimulus, glucosinolate biosynthetic process, adventitious root development, indoleacetic acid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Tyrosine transaminase (InterPro:IPR021178), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Tyrosine transaminase family protein (TAIR:AT4G28420.2); Has 40950 Blast hits to 40944 proteins in 3034 species: Archae - 1011; Bacteria - 29323; Metazoa - 781; Fungi - 784; Plants - 1326; Viruses - 0; Other Eukaryotes - 7725 (source: NCBI BLink).
    NP_973489.1
    • SUPERROOT 1 (SUR1); FUNCTIONS IN: S-alkylthiohydroximate lyase activity, carbon-sulfur lyase activity, transaminase activity; INVOLVED IN: regulation of cell growth by extracellular stimulus, glucosinolate biosynthetic process, adventitious root development, indoleacetic acid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Tyrosine transaminase (InterPro:IPR021178), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Tyrosine transaminase family protein (TAIR:AT4G28420.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8877887..8880440 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127622.4 → NP_179650.1  Tyrosine transaminase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179650.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IVH1, Q940P9, Q9SIV0
      UniProtKB/TrEMBL
      Q9FPU1
      Conserved Domains (2) summary
      cd00609
      Location:69 → 433
      AAT_like; Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine ...
      PLN02187
      Location:1 → 462
      PLN02187; rooty/superroot1

    2. NM_201760.2 → NP_973489.1  Tyrosine transaminase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973489.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9FPU1
      Conserved Domains (2) summary
      cd00609
      Location:69 → 405
      AAT_like; Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine ...
      PLN02187
      Location:1 → 436
      PLN02187; rooty/superroot1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SIV0.1

    Gene LinkOut

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