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    TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838783, updated on 18-Sep-2024

    Summary

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    Official Full Name
    TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
    Primary source
    TAIR:AT1G21790
    Locus tag
    AT1G21790
    See related
    Araport:AT1G21790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8K7.23; F8K7_23
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (7654088..7655981)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box protein 7 Neighboring gene Acyl-CoA N-acyltransferases (NAT) superfamily protein Neighboring gene BTB/POZ domain-containing protein Neighboring gene tRNA-Gln Neighboring gene filament-like protein (DUF869)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A mesoscale abscisic acid hormone interactome reveals a dynamic signaling landscape in Arabidopsis. Lumba S, et al. Dev Cell, 2014 May 12. PMID 24823379
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_102028.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
    NP_564152.1
    • TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); Has 174 Blast hits to 174 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      7654088..7655981
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102028.3 → NP_564152.1  TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564152.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WAF1, A0A5S9VHC5, A0A654ECZ5, Q9XHZ7
      Conserved Domains (1) summary
      smart00724
      Location:65 → 270
      TLC; TRAM, LAG1 and CLN8 homology domains
    Nucleotide Protein
    Heading Accession and Version

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